CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15078	Soybean	plastid	90.0	85.71
VIT_13s0019g02060.t01	Wine grape	mitochondrion, nucleus	54.09	54.34
KRH19529	Soybean	plastid	27.27	49.59
AT5G06080.1	Thale cress	mitochondrion, nucleus	38.64	48.02
Bra009161.1-P	Field mustard	nucleus	37.73	45.36
CDX98901	Canola	nucleus	37.73	45.36
CDY60434	Canola	nucleus	37.27	44.81
KRH73761	Soybean	cytosol, nucleus, plastid	14.55	44.44
KRG95645	Soybean	mitochondrion, nucleus	41.82	44.23
KRH67348	Soybean	nucleus	40.45	41.98
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	26.82	38.06
KRH32157	Soybean	mitochondrion, nucleus	40.45	37.24
KRH19530	Soybean	mitochondrion, nucleus	39.09	36.29
KRG95644	Soybean	nucleus	33.64	34.74
KRH67347	Soybean	plastid	33.64	34.74
KRH59547	Soybean	mitochondrion, nucleus, plastid	22.27	34.27
KRH76281	Soybean	cytosol, nucleus, plastid	30.45	33.84
KRH14351	Soybean	mitochondrion	21.82	33.57
KRH32155	Soybean	plastid	31.36	32.39
KRH76282	Soybean	plastid	35.0	31.17
KRH65255	Soybean	cytosol, nucleus, plastid	30.0	31.13
KRH65254	Soybean	plastid	35.45	31.08
KRG94981	Soybean	nucleus	33.18	30.54
KRH00577	Soybean	plastid	32.27	30.34
KRH40590	Soybean	plastid	31.82	30.17
KRH71749	Soybean	cytosol, mitochondrion, nucleus	32.27	29.83
KRH32932	Soybean	cytosol, mitochondrion, nucleus	32.27	29.71
KRH14922	Soybean	mitochondrion	24.09	29.12
KRG97704	Soybean	mitochondrion	23.64	29.05
KRH73279	Soybean	mitochondrion	24.55	28.72
KRH31169	Soybean	mitochondrion	23.64	27.51

Protein Annotations

EMBL:ACUP02001263	EnsemblPlants:KRH73061	EnsemblPlantsGene:GLYMA_02G249700	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH73061	ProteinID:KRH73061.1	SEG:seg
UniParc:UPI0002337933	UniProt:K7KAM4	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:43723333..43724257

Molecular Weight (calculated)

24224.3 Da

IEP (calculated)

5.998

GRAVY (calculated)

-0.187

Length

220 amino acids

Sequence
(BLAST)

001: MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQASTHFAAV HKIYGASNVS KLLSHLPIQN RSDAAVTISY EALARMQDPI YGCVAHIYAL QHQVASLQEE
101: IDALGNLVAN SSVSVVNCGS VQATINSNNG TQFNILQHDA TRTQYCQNNL ANFLSQEGSA TVFQSLINSQ MDIELPNCTQ VEHPSFGDFN SNPLEQFLSG
201: IDQEMFVNHP WFKHNADIKN

Best Arabidopsis Sequence Match ( AT5G06080.1 )
(BLAST)

001: MASHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPQHQ RNIAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE
101: IEFLGSQMKN FSYSNQNGSQ LNNIPEFVNQ MTMATTNFVD ESVLNNADGR NCYDGFFTNS EEMLVNHQWL QNMDYYY

Arabidopsis Description

LBD33LOB domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.