CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19529	Soybean	plastid	45.07	79.34
CDY35378	Canola	cytosol, nucleus, plastid	37.56	77.67
KRG95644	Soybean	nucleus	69.48	69.48
KRH67347	Soybean	plastid	69.01	69.01
EER95498	Sorghum	cytosol, nucleus, plastid	43.66	55.36
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	42.72	54.49
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	47.42	52.33
GSMUA_Achr1P01350_001	Banana	nucleus	49.3	52.24
CDY64515	Canola	nucleus, plastid	59.62	52.05
Bra004693.1-P	Field mustard	plastid	59.62	52.05
Bra000257.1-P	Field mustard	nucleus	57.28	51.26
CDY70198	Canola	nucleus	58.69	51.23
AT2G42430.1	Thale cress	plastid	58.69	51.02
CDY22562	Canola	nucleus	56.81	50.84
CDY14831	Canola	nucleus	58.69	50.81
CDY47969	Canola	nucleus	58.22	50.41
Os03t0149000-01	Rice	plastid	43.66	50.27
Bra016877.1-P	Field mustard	nucleus	57.75	50.0
HORVU4Hr1G080150.1	Barley	plastid	41.31	47.83
TraesCS4A01G415300.1	Wheat	plastid	41.31	47.57
EES07771	Sorghum	plastid	47.89	47.44
Os02t0820500-01	Rice	plastid	47.42	46.76
TraesCS4D01G312700.1	Wheat	plastid	40.85	46.52
Zm00001d051891_P001	Maize	plastid	46.95	46.3
TraesCS4B01G316100.1	Wheat	plastid	40.38	45.99
TraesCS6A01G398400.1	Wheat	plastid	43.19	44.66
TraesCS6B01G438700.1	Wheat	plastid	44.13	44.55
TraesCS6D01G382600.1	Wheat	plastid	43.66	44.5
HORVU0Hr1G017670.2	Barley	plastid	43.66	44.29
KRG95645	Soybean	mitochondrion, nucleus	41.78	42.79
KRH76281	Soybean	cytosol, nucleus, plastid	38.5	41.41
KRH67348	Soybean	nucleus	40.85	41.04
KRH32157	Soybean	mitochondrion, nucleus	45.07	40.17
KRH65255	Soybean	cytosol, nucleus, plastid	39.91	40.09
KRH19530	Soybean	mitochondrion, nucleus	43.66	39.24
KRH73761	Soybean	cytosol, nucleus, plastid	13.15	38.89
KRH76282	Soybean	plastid	43.66	37.65
KRH71749	Soybean	cytosol, mitochondrion, nucleus	41.78	37.4
KRG94981	Soybean	nucleus	41.78	37.24
KRH65254	Soybean	plastid	43.19	36.65
KRH40590	Soybean	plastid	39.91	36.64
KRH00577	Soybean	plastid	39.91	36.32
KRH32932	Soybean	cytosol, mitochondrion, nucleus	40.38	35.98
KRH59547	Soybean	mitochondrion, nucleus, plastid	23.0	34.27
KRH14922	Soybean	mitochondrion	27.7	32.42
KRG97704	Soybean	mitochondrion	27.23	32.4
KRH73279	Soybean	mitochondrion	28.17	31.91
KRH14351	Soybean	mitochondrion	21.13	31.47
KRH73061	Soybean	mitochondrion, nucleus	32.39	31.36
KRH31169	Soybean	mitochondrion	27.7	31.22
KRH15078	Soybean	plastid	31.92	29.44

Protein Annotations

EMBL:ACUP02006096	EnsemblPlants:KRH32155	EnsemblPlantsGene:GLYMA_10G035000	EntrezGene:100776145	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH32155
ProteinID:KRH32155.1	SEG:seg	UniParc:UPI000233C808	UniProt:K7LH87	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr10:+:3045331..3046792

Molecular Weight (calculated)

23545.0 Da

IEP (calculated)

7.641

GRAVY (calculated)

-0.215

Length

213 amino acids

Sequence
(BLAST)

001: MASATGSGSS SGFGSPCGAC KFLRRKCVTD CIFAPYFCSE QGAAKFAAIH KVFGASNVSK LLLRIPAHGR FEAILTIAYE AQARLRDPVY GCVSHIFALQ
101: QQVACLQAQV MQMKAQLDQN HMEPRNFENH WSENVAQSFN PFCPTSMNNL ISPQSSLDSL GYSSINDGMS MLDVQSSREE YFALQACNSK KRSYNNDLGE
201: LQELALRMIR NCD

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.