Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 76.22 | 84.43 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 76.22 | 83.93 |
| TraesCS4A01G415300.1 | Wheat | plastid | 76.76 | 76.76 |
| TraesCS4B01G316100.1 | Wheat | plastid | 77.3 | 76.47 |
| HORVU4Hr1G080150.1 | Barley | plastid | 75.68 | 76.09 |
| TraesCS4D01G312700.1 | Wheat | plastid | 76.76 | 75.94 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 36.22 | 65.05 |
| KRH19529 | Soybean | plastid | 37.3 | 57.02 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 49.19 | 46.67 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 50.27 | 46.27 |
| Solyc06g083930.1.1 | Tomato | nucleus | 48.65 | 45.92 |
| PGSC0003DMT400051680 | Potato | nucleus | 48.11 | 45.64 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 46.49 | 44.56 |
| KRH32155 | Soybean | plastid | 50.27 | 43.66 |
| PGSC0003DMT400025135 | Potato | nucleus | 49.19 | 41.18 |
| Os02t0820500-01 | Rice | plastid | 46.49 | 39.81 |
| Solyc09g066260.2.1 | Tomato | nucleus | 47.57 | 38.26 |
| AT2G42430.1 | Thale cress | plastid | 50.27 | 37.96 |
| CDY64515 | Canola | nucleus, plastid | 49.19 | 37.3 |
| Bra004693.1-P | Field mustard | plastid | 49.19 | 37.3 |
| CDY47969 | Canola | nucleus | 49.19 | 36.99 |
| CDY14831 | Canola | nucleus | 49.19 | 36.99 |
| Bra000257.1-P | Field mustard | nucleus | 47.57 | 36.97 |
| CDY70198 | Canola | nucleus | 48.65 | 36.89 |
| Bra016877.1-P | Field mustard | nucleus | 48.65 | 36.59 |
| CDY22562 | Canola | nucleus | 47.03 | 36.55 |
| Os08t0563400-00 | Rice | mitochondrion | 42.16 | 36.28 |
| Os03t0149100-01 | Rice | mitochondrion | 45.41 | 32.43 |
| Os10t0162600-00 | Rice | nucleus | 42.16 | 29.0 |
| Os03t0246900-00 | Rice | nucleus | 42.7 | 28.73 |
| Os01t0772100-01 | Rice | mitochondrion | 37.3 | 28.16 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 14.05 | 27.37 |
Protein Annotations
| EMBL:AB200235 | EnsemblPlants:Os03t0149000-01 | EnsemblPlantsGene:Os03g0149000 | EntrezGene:4331627 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF13 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ABF93993.1 |
| ProteinID:BAF10884.1 | ProteinID:BAS82304.1 | RefSeq:XP_015632118.1 | SEG:seg | UniParc:UPI00004C3D0F | UniProt:Q5KQR7 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
CRL1L1Similar to LOB domain protein 31. (Os03t0149000-01)
Coordinates
chr3:+:2723037..2723835
Molecular Weight (calculated)
19632.1 Da
IEP (calculated)
6.485
GRAVY (calculated)
-0.186
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSGVGGVP GSPCGACKFL RRKCAAECVF APYFCAEDGA AQFAAIHKVF GASNAAKLLQ QVAPGDRSEV AATVTYEAQA RLRDPVYGCV AHIFALQQQL
101: ATLQVQVAQA KTQVAQTLAA AGMLTAGNPL LQHQQQQQQA WQIEHESTMT STQSSGCYSA PRSDGSTSLQ DMYCFGEQEE GSYSR
101: ATLQVQVAQA KTQVAQTLAA AGMLTAGNPL LQHQQQQQQA WQIEHESTMT STQSSGCYSA PRSDGSTSLQ DMYCFGEQEE GSYSR
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.