Factsheet for Os03t0149100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92849	Sorghum	mitochondrion	76.83	81.22
Zm00001d048401_P001	Maize	nucleus	66.02	73.08
TraesCS4D01G312800.1	Wheat	plastid	73.36	66.43
HORVU4Hr1G080160.1	Barley	plastid	72.59	66.2
TraesCS4A01G415400.1	Wheat	nucleus	73.36	65.74
TraesCS4B01G316200.1	Wheat	nucleus, plastid	72.97	65.62
Os08t0563400-00	Rice	mitochondrion	44.02	53.02
GSMUA_Achr4P25190_001	Banana	mitochondrion	42.86	51.87
KRG95645	Soybean	mitochondrion, nucleus	41.31	51.44
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	45.95	51.29
GSMUA_AchrUn_...	Banana	mitochondrion	45.17	50.43
GSMUA_Achr11P...	Banana	mitochondrion	40.93	50.24
KRH67348	Soybean	nucleus	40.15	49.06
KRH19530	Soybean	mitochondrion, nucleus	44.4	48.52
KRH32157	Soybean	mitochondrion, nucleus	44.02	47.7
Os02t0820500-01	Rice	plastid	39.0	46.76
GSMUA_Achr8P14330_001	Banana	mitochondrion	42.08	46.58
PGSC0003DMT400025142	Potato	nucleus	43.63	46.12
Solyc09g066270.2.1	Tomato	nucleus	43.24	45.9
Os03t0149000-01	Rice	plastid	32.43	45.41
Os03t0246900-00	Rice	nucleus	38.61	36.36
Os10t0162600-00	Rice	nucleus	35.91	34.57
Os01t0772100-01	Rice	mitochondrion	29.34	31.02
Os08t0517100-01	Rice	cytosol, nucleus, plastid	8.88	24.21

Protein Annotations

MapMan:15.5.24	EntrezGene:9271993	ProteinID:AAN87738.1	EMBL:AB200234	ProteinID:ABF93994.1	EMBL:AY736375
ProteinID:BAH91996.1	ProteinID:BAS82305.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009791	GO:GO:0010311	GO:GO:0042803	GO:GO:0048830	InterPro:IPR004883
InterPro:LOB	EnsemblPlantsGene:Os03g0149100	EnsemblPlants:Os03t0149100-01	PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	UniProt:Q5UG13	UniParc:UPI0000458551	RefSeq:XP_015632119.1	SEG:seg	:

Description

CROWN ROOTLESS 1ASYMMETRIC LEAVES2 (AS2)/LATERAL ORGAN BOUNDARIES (LOB) domain transcription factor, Crown root formation (Os03t0149100-01)

Coordinates

chr3:-:2726696..2727559

Molecular Weight (calculated)

26737.9 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.085

Length

259 amino acids

Sequence
(BLAST)

001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ
101: LASLKAAAAQ GIHHQDVGAT TKGGYMSAAA TAADDQLGYG GYNQWCGSNG GGAPAASQPG AYSSNGGAGH GHDSITALLA AGSDYMQHSL YHAFEHSEGA
201: GAVDDGHAAA AAFEAAAESS SCGMAASFAA DESVWRSSSS GYQDCEDLQS VAYAYLNRS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.