Factsheet for PGSC0003DMT400025142

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066270.2.1	Tomato	nucleus	97.14	97.54
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	61.22	64.66
KRG95645	Soybean	mitochondrion, nucleus	53.47	62.98
KRH67348	Soybean	nucleus	53.47	61.79
KRH32157	Soybean	mitochondrion, nucleus	60.0	61.51
KRH19530	Soybean	mitochondrion, nucleus	57.96	59.92
GSMUA_Achr4P25190_001	Banana	mitochondrion	46.94	53.74
GSMUA_AchrUn_...	Banana	mitochondrion	50.61	53.45
PGSC0003DMT400033253	Potato	plastid	29.8	52.52
GSMUA_Achr1P06580_001	Banana	mitochondrion	43.67	51.2
GSMUA_Achr10P...	Banana	mitochondrion	43.27	48.4
GSMUA_Achr11P...	Banana	mitochondrion	40.82	47.39
GSMUA_AchrUn_...	Banana	mitochondrion	43.67	47.35
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	41.22	47.2
GSMUA_Achr8P14330_001	Banana	mitochondrion	44.08	46.15
PGSC0003DMT400025135	Potato	nucleus	41.63	46.15
TraesCS4D01G001700.1	Wheat	mitochondrion	40.41	45.62
Zm00001d027679_P001	Maize	cytosol, nucleus	45.31	45.49
EER92849	Sorghum	mitochondrion	44.9	44.9
PGSC0003DMT400051680	Potato	nucleus	35.51	44.62
Zm00001d048401_P001	Maize	nucleus	42.04	44.02
Os03t0149100-01	Rice	mitochondrion	46.12	43.63
HORVU4Hr1G000880.4	Barley	cytosol, nucleus, plastid	39.18	42.67
TraesCS4A01G312500.1	Wheat	mitochondrion	37.55	42.01
TraesCSU01G132900.1	Wheat	nucleus	39.18	40.85
TraesCS4B01G001200.1	Wheat	nucleus	39.59	40.59
TraesCS6B01G072200.1	Wheat	nucleus	39.18	40.51
TraesCS6A01G053700.1	Wheat	nucleus	37.55	38.82
HORVU4Hr1G080160.1	Barley	plastid	43.67	37.68
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	20.41	37.59
TraesCS4D01G312800.1	Wheat	plastid	43.67	37.41
TraesCS4B01G316200.1	Wheat	nucleus, plastid	43.67	37.15
TraesCS4A01G415400.1	Wheat	nucleus	42.86	36.33
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	22.86	36.13
PGSC0003DMT400057829	Potato	nucleus	34.29	34.85
PGSC0003DMT400071281	Potato	plastid	23.27	32.2

Protein Annotations

EntrezGene:102604971	MapMan:15.5.24	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009791	GO:GO:0010311	GO:GO:0042803	GO:GO:0048830	InterPro:IPR004883
InterPro:LOB	UniProt:M1AL26	PFAM:PF03195	EnsemblPlantsGene:PGSC0003DMG400009716	PGSC:PGSC0003DMG400009716	EnsemblPlants:PGSC0003DMT400025142
PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	UniParc:UPI000294970F	RefSeq:XP_006351689.1	SEG:seg

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009716]

Coordinates

chr9:-:49732194..49733341

Molecular Weight (calculated)

27483.7 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.514

Length

245 amino acids

Sequence
(BLAST)

001: MTGTGSPCGA CKFLRRKCIK GCVFAPYFCY EQGATHFSAI HKVFGASNVS KLLAHIPVSD RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ
101: LASLKEQAAA QNIQHGSNYI ANPNYDKFQD VQSWFHHQSE NPNTMPQFDH SISSLTSNNN IGSSIPYYDE NNYNNMTSND HNYHMGNNYE NINFVVPIKE
201: NMSSFEEGGS CSVDSSFDNN KQWTFQDHDV VDDLQSVAFR YLQHS

Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)

001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS

Arabidopsis Description

LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.