Factsheet for HORVU4Hr1G080160.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G312800.1	Wheat	plastid	91.9	91.26
TraesCS4B01G316200.1	Wheat	nucleus, plastid	90.14	88.89
TraesCS4A01G415400.1	Wheat	nucleus	90.14	88.58
EER92849	Sorghum	mitochondrion	62.68	72.65
Os03t0149100-01	Rice	mitochondrion	66.2	72.59
Zm00001d027679_P001	Maize	cytosol, nucleus	62.32	72.54
HORVU0Hr1G020290.1	Barley	cytosol, plastid	23.94	54.4
GSMUA_Achr4P25190_001	Banana	mitochondrion	37.68	50.0
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	40.14	49.14
KRG95645	Soybean	mitochondrion, nucleus	35.92	49.04
GSMUA_AchrUn_...	Banana	mitochondrion	38.73	47.41
KRH67348	Soybean	nucleus	35.21	47.17
KRH19530	Soybean	mitochondrion, nucleus	38.38	45.99
HORVU4Hr1G080150.1	Barley	plastid	29.58	45.65
GSMUA_Achr11P...	Banana	mitochondrion	33.8	45.5
KRH32157	Soybean	mitochondrion, nucleus	38.03	45.19
HORVU0Hr1G017670.2	Barley	plastid	32.75	44.29
GSMUA_Achr8P14330_001	Banana	mitochondrion	36.27	44.02
HORVU4Hr1G000880.4	Barley	cytosol, nucleus, plastid	34.86	44.0
PGSC0003DMT400025142	Potato	nucleus	37.68	43.67
Solyc09g066270.2.1	Tomato	nucleus	37.32	43.44
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	30.28	37.72
HORVU4Hr1G063160.1	Barley	plastid	32.39	35.94
HORVU5Hr1G075950.1	Barley	cytosol, nucleus	10.56	34.48
HORVU3Hr1G075370.2	Barley	nucleus	26.76	32.62
HORVU4Hr1G084750.2	Barley	cytosol, nucleus	18.66	29.94

Protein Annotations

MapMan:15.5.24	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009791	GO:GO:0010311	GO:GO:0042803	GO:GO:0048830	EnsemblPlantsGene:HORVU4Hr1G080160	EnsemblPlants:HORVU4Hr1G080160.1
InterPro:IPR004883	InterPro:LOB	UniProt:M0UGQ3	PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	UniParc:UPI0002955243	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:614410389..614411827

Molecular Weight (calculated)

30411.4 Da

IEP (calculated)

7.378

GRAVY (calculated)

-0.461

Length

284 amino acids

Sequence
(BLAST)

001: MALGRPLHPN HPQQQQQRSP QHRRQQRSGR PPSDPAVITD RLMSMTGLGS PCGACKFLRR KCARGCVFAP YFCHEQGAAH FAAIHKVFGA SNVSKLLAHL
101: PISDRAEAAV TVSYEAQARL RDPVYGCVAH IFALQQQVMT LQAQLASLKA HAPPAPQGMQ QHQDDVKGYV GGGAADQYGH GAYQWYNGNG AAAQQQCAYG
201: GNGGAVAGHD SITALLSGSA ASDYMMYHAL EQSASDDDRH AAAAAFEAAD QSSFGTEESG WRSSSGYQDC EDLQSVAYAY LNRS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.