Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G312700.1 | Wheat | plastid | 95.65 | 94.12 |
| TraesCS4B01G316100.1 | Wheat | plastid | 95.11 | 93.58 |
| TraesCS4A01G415300.1 | Wheat | plastid | 94.02 | 93.51 |
| Os03t0149000-01 | Rice | plastid | 76.09 | 75.68 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 65.76 | 72.46 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 65.22 | 71.43 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 37.5 | 66.99 |
| KRH19529 | Soybean | plastid | 36.96 | 56.2 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 32.61 | 48.0 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 47.28 | 44.62 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 47.28 | 43.28 |
| PGSC0003DMT400051680 | Potato | nucleus | 45.65 | 43.08 |
| Solyc06g083930.1.1 | Tomato | nucleus | 45.65 | 42.86 |
| HORVU0Hr1G017670.2 | Barley | plastid | 48.91 | 42.86 |
| KRH32155 | Soybean | plastid | 47.83 | 41.31 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 42.93 | 40.93 |
| PGSC0003DMT400025135 | Potato | nucleus | 47.83 | 39.82 |
| Solyc09g066260.2.1 | Tomato | nucleus | 47.83 | 38.26 |
| Bra004693.1-P | Field mustard | plastid | 50.0 | 37.7 |
| Bra000257.1-P | Field mustard | nucleus | 48.37 | 37.4 |
| CDY64515 | Canola | nucleus, plastid | 49.46 | 37.3 |
| AT2G42430.1 | Thale cress | plastid | 49.46 | 37.14 |
| CDY22562 | Canola | nucleus | 47.83 | 36.97 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 45.11 | 36.89 |
| CDY70198 | Canola | nucleus | 48.91 | 36.89 |
| CDY47969 | Canola | nucleus | 48.91 | 36.59 |
| CDY14831 | Canola | nucleus | 48.91 | 36.59 |
| Bra016877.1-P | Field mustard | nucleus | 48.37 | 36.18 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 16.85 | 35.63 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 39.67 | 31.33 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 36.96 | 29.82 |
| HORVU4Hr1G080160.1 | Barley | plastid | 45.65 | 29.58 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 28.26 | 29.38 |
| HORVU4Hr1G063160.1 | Barley | plastid | 40.22 | 28.91 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G080150.1 | EnsemblPlantsGene:HORVU4Hr1G080150 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF13 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00029681A2 | UniProt:M0UGQ2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:614403440..614404576
Molecular Weight (calculated)
19266.4 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.192
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAGVTTTG SPCGACKFLR RRCAAECVFA PYFCAEDGAS QFAAIHKVFG ASNAAKLLQQ VAPGDRSEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA
101: ALQAQVAHAR TQAQLGAAAT AMHPLLQQQA WQQAAAAEHD HHSITSTQSS SGCYSGAHQR SDGSSLHGAE MYACGYGEQE EGSY
101: ALQAQVAHAR TQAQLGAAAT AMHPLLQQQA WQQAAAAEHD HHSITSTQSS SGCYSGAHQR SDGSSLHGAE MYACGYGEQE EGSY
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.