Factsheet for Zm00001d027678_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95498	Sorghum	cytosol, nucleus, plastid	97.01	96.43
Os03t0149000-01	Rice	plastid	84.43	76.22
HORVU4Hr1G080150.1	Barley	plastid	72.46	65.76
TraesCS4A01G415300.1	Wheat	plastid	72.46	65.41
CDY35378	Canola	cytosol, nucleus, plastid	40.12	65.05
TraesCS4D01G312700.1	Wheat	plastid	72.46	64.71
TraesCS4B01G316100.1	Wheat	plastid	71.86	64.17
KRH19529	Soybean	plastid	40.72	56.2
VIT_07s0005g03030.t01	Wine grape	plastid	53.89	46.15
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	51.5	44.56
Solyc06g083930.1.1	Tomato	nucleus	50.9	43.37
GSMUA_Achr1P01350_001	Banana	nucleus	52.1	43.28
PGSC0003DMT400051680	Potato	nucleus	50.3	43.08
KRH32155	Soybean	plastid	54.49	42.72
Zm00001d051891_P001	Maize	plastid	52.1	40.28
PGSC0003DMT400025135	Potato	nucleus	51.5	38.91
AT2G42430.1	Thale cress	plastid	53.89	36.73
CDY64515	Canola	nucleus, plastid	53.29	36.48
Bra004693.1-P	Field mustard	plastid	53.29	36.48
Solyc09g066260.2.1	Tomato	nucleus	49.7	36.09
CDY70198	Canola	nucleus	52.69	36.07
Zm00001d031882_P001	Maize	plastid	46.11	35.81
CDY14831	Canola	nucleus	52.1	35.37
CDY47969	Canola	nucleus	52.1	35.37
Bra000257.1-P	Field mustard	nucleus	50.3	35.29
Zm00001d027679_P001	Maize	cytosol, nucleus	51.5	35.25
Zm00001d048401_P001	Maize	nucleus	49.1	35.04
Bra016877.1-P	Field mustard	nucleus	51.5	34.96
CDY22562	Canola	nucleus	49.7	34.87
Zm00001d043311_P001	Maize	plastid	41.92	31.67
Zm00001d030364_P001	Maize	plastid	45.51	31.02
Zm00001d047921_P001	Maize	plastid	49.1	30.94
Zm00001d028413_P001	Maize	plastid	46.11	29.62
Zm00001d034384_P001	Maize	plastid	25.75	26.22
Zm00001d031544_P001	Maize	plastid	30.54	24.76
Zm00001d018832_P001	Maize	nucleus	30.54	8.31
Zm00001d007919_P001	Maize	mitochondrion	30.54	7.47

Protein Annotations

EMBL:EF051734	EMBL:KJ728375	EnsemblPlants:Zm00001d027678_P001	EnsemblPlants:Zm00001d027678_T001	EnsemblPlantsGene:Zm00001d027678	EntrezGene:100125645
InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF13	PFAM:PF03195
PFscan:PS50891	ProteinID:ONL93674.1	SEG:seg	UniParc:UPI0000F07B45	UniProt:A5H450	MapMan:15.5.24

Description

LBD-transcription factor 1RTCN

Coordinates

chr1:+:10986933..10988125

Molecular Weight (calculated)

17443.5 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.131

Length

167 amino acids

Sequence
(BLAST)

001: MASSGSGGGS PGSPCGACKF LRRKCAAECV FAPHFCAEDG AAQFAAIHKV FGASNAAKLL QQVAPADRSE AAATVTYEAQ ARLRDPIYGC VAHIFALQQQ
101: VASLQMQVLQ AKAQVAQTMA AAGPQGGSSP LLQRWPLEPE SLSTQSSGCY SDMYCGFGDQ EEGSYTR

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.