Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07771 | Sorghum | plastid | 93.52 | 93.95 |
| Os02t0820500-01 | Rice | plastid | 82.41 | 82.41 |
| TraesCS6D01G382600.1 | Wheat | plastid | 71.76 | 74.16 |
| TraesCS6A01G398400.1 | Wheat | plastid | 70.37 | 73.79 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 34.72 | 72.82 |
| HORVU0Hr1G017670.2 | Barley | plastid | 68.52 | 70.48 |
| TraesCS6B01G438700.1 | Wheat | plastid | 68.06 | 69.67 |
| KRH19529 | Soybean | plastid | 32.41 | 57.85 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 50.46 | 55.9 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 46.76 | 52.33 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 40.28 | 52.1 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 44.91 | 48.26 |
| PGSC0003DMT400025135 | Potato | nucleus | 49.07 | 47.96 |
| KRH32155 | Soybean | plastid | 46.3 | 46.95 |
| Solyc09g066260.2.1 | Tomato | nucleus | 46.76 | 43.91 |
| Solyc06g083930.1.1 | Tomato | nucleus | 39.81 | 43.88 |
| CDY14831 | Canola | nucleus | 49.54 | 43.5 |
| CDY64515 | Canola | nucleus, plastid | 49.07 | 43.44 |
| Bra004693.1-P | Field mustard | plastid | 49.07 | 43.44 |
| Bra000257.1-P | Field mustard | nucleus | 47.69 | 43.28 |
| CDY47969 | Canola | nucleus | 49.07 | 43.09 |
| PGSC0003DMT400051680 | Potato | nucleus | 38.89 | 43.08 |
| CDY70198 | Canola | nucleus | 48.61 | 43.03 |
| CDY22562 | Canola | nucleus | 47.22 | 42.86 |
| Bra016877.1-P | Field mustard | nucleus | 48.61 | 42.68 |
| AT2G42430.1 | Thale cress | plastid | 48.15 | 42.45 |
| Zm00001d031882_P001 | Maize | plastid | 41.2 | 41.4 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 46.76 | 41.39 |
| Zm00001d048401_P001 | Maize | nucleus | 43.06 | 39.74 |
| Zm00001d028413_P001 | Maize | plastid | 42.13 | 35.0 |
| Zm00001d043311_P001 | Maize | plastid | 35.65 | 34.84 |
| Zm00001d047921_P001 | Maize | plastid | 41.67 | 33.96 |
| Zm00001d030364_P001 | Maize | plastid | 37.04 | 32.65 |
| Zm00001d034384_P001 | Maize | plastid | 23.61 | 31.1 |
| Zm00001d031544_P001 | Maize | plastid | 26.85 | 28.16 |
| Zm00001d018832_P001 | Maize | nucleus | 27.78 | 9.77 |
| Zm00001d007919_P001 | Maize | mitochondrion | 30.09 | 9.52 |
Protein Annotations
| EnsemblPlants:Zm00001d051891_P001 | EnsemblPlants:Zm00001d051891_T001 | EnsemblPlantsGene:Zm00001d051891 | EntrezGene:103654112 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF20 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQK55396.1 |
| SEG:seg | UniParc:UPI000220ADF6 | UniProt:K7U8R9 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 24Putative LOB domain-containing family protein
Coordinates
chr4:+:173818577..173819660
Molecular Weight (calculated)
22427.6 Da
IEP (calculated)
7.965
GRAVY (calculated)
0.095
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MANGGAAAAA AAAAAATGAG SPCGACKFLR RRCVPECVFA PYFSSDQGAA RFAAIHKVFG ASNASKLLSH LPVADRCEAV VTITYEAQAR LRDPVYGCVA
101: QIFALQQQVA ILQAQLMQAK AQLACGVQGA AAHSPASHHH HQWPDSASIS ALLRQDAACS ARRTGGPLDD FFTPELVAGF RDDVAAAAGQ HCAGKVDAGE
201: LQYLAQAMMR SPNYSL
101: QIFALQQQVA ILQAQLMQAK AQLACGVQGA AAHSPASHHH HQWPDSASIS ALLRQDAACS ARRTGGPLDD FFTPELVAGF RDDVAAAAGQ HCAGKVDAGE
201: LQYLAQAMMR SPNYSL
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.