Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01535 | Sorghum | plastid | 88.69 | 87.89 |
| TraesCS3A01G295100.1 | Wheat | nucleus | 56.56 | 54.11 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 56.11 | 53.22 |
| TraesCS3D01G308000.1 | Wheat | mitochondrion | 57.01 | 51.22 |
| Os01t0772100-01 | Rice | mitochondrion | 54.3 | 48.98 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 31.67 | 41.92 |
| Zm00001d051891_P001 | Maize | plastid | 34.84 | 35.65 |
| Zm00001d030364_P001 | Maize | plastid | 39.37 | 35.51 |
| Zm00001d028413_P001 | Maize | plastid | 38.01 | 32.31 |
| Zm00001d047921_P001 | Maize | plastid | 37.56 | 31.32 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 33.03 | 29.92 |
| Zm00001d048401_P001 | Maize | nucleus | 31.67 | 29.91 |
| Zm00001d034384_P001 | Maize | plastid | 22.17 | 29.88 |
| Zm00001d031882_P001 | Maize | plastid | 28.51 | 29.3 |
| Zm00001d031544_P001 | Maize | plastid | 26.24 | 28.16 |
| Zm00001d018832_P001 | Maize | nucleus | 25.34 | 9.12 |
| Zm00001d007919_P001 | Maize | mitochondrion | 27.15 | 8.78 |
Protein Annotations
| EMBL:BT086412 | EMBL:KJ727726 | EnsemblPlants:Zm00001d043311_P001 | EnsemblPlants:Zm00001d043311_T001 | EnsemblPlantsGene:Zm00001d043311 | EntrezGene:100501856 |
| InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF8 | PFAM:PF03195 | PFscan:PS50891 |
| ProteinID:ONM37527.1 | SEG:seg | UniParc:UPI0001A4C73D | UniProt:C4J6G5 | MapMan:15.5.24 | : |
Description
LBD-transcription factor 21LOB domain-containing protein 20
Coordinates
chr3:-:195854423..195855820
Molecular Weight (calculated)
22981.6 Da
IEP (calculated)
7.961
GRAVY (calculated)
0.038
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRATQPPSK RTSAAPVAAV AAAGPAHAQG EETSLWGSGA PCGACKFLRR RCVPGCVFAP HFGGSGGGGA GAAQFAAVHK VFGASNVAKM LSQVPLALCR
101: DAASTVCYEA QARIADPVYG CVGTILALQH QVALVQAELT IAQTELLNRR MALATVHPAY SVVSPTSQMV NCSALSQTLD FIDTEPKCLP LPPPLLPSQQ
201: QRGEEHERGS PTDVFAHIPE K
101: DAASTVCYEA QARIADPVYG CVGTILALQH QVALVQAELT IAQTELLNRR MALATVHPAY SVVSPTSQMV NCSALSQTLD FIDTEPKCLP LPPPLLPSQQ
201: QRGEEHERGS PTDVFAHIPE K
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.