CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043311_P001	Maize	plastid	87.89	88.69
TraesCS3A01G295100.1	Wheat	nucleus	59.64	57.58
HORVU3Hr1G075370.2	Barley	nucleus	59.19	56.65
TraesCS3D01G308000.1	Wheat	mitochondrion	60.09	54.47
Os01t0772100-01	Rice	mitochondrion	55.16	50.2
EER95498	Sorghum	cytosol, nucleus, plastid	31.84	42.26
EES07771	Sorghum	plastid	35.87	37.21
KXG38649	Sorghum	plastid	37.22	31.92
EER92557	Sorghum	nucleus	39.01	31.52
EES14059	Sorghum	mitochondrion	29.6	30.7
EER92849	Sorghum	mitochondrion	32.74	29.8
EER93325	Sorghum	plastid	22.42	27.78
OQU80868	Sorghum	peroxisome	24.66	27.36
OQU88465	Sorghum	nucleus	29.15	6.94

Protein Annotations

EnsemblPlants:EES01535	EnsemblPlantsGene:SORBI_3003G311100	EntrezGene:8072131	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF8	PFAM:PF03195	PFscan:PS50891	ProteinID:EES01535	ProteinID:EES01535.1	RefSeq:XP_002456415.1
SEG:seg	UniParc:UPI0001A84334	UniProt:C5XLJ4	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr3:+:63928206..63929514

Molecular Weight (calculated)

23127.6 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.016

Length

223 amino acids

Sequence
(BLAST)

001: MSRATQSPSK RANAASVAAV AAAGPAHAQG EEASSLWGAG APCGACKFLR RRCVPGCVFA PHFGGSGGGG AGAAQFAAVH KVFGASNVAK MLSRVPVALR
101: RDAASTVCYE AQARIADPVY GCVGTILALQ HQVALVQAEL SIAQTELLNH RLALATVHPA YTVASPTSQM VNCSSLSQAV DFIDTEPKCF PPPLLPLPSQ
201: QQREQERERG SPTDVFAHNT PGK

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.