CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028413_P001	Maize	plastid	88.41	93.85
Zm00001d047921_P001	Maize	plastid	87.32	90.94
Os03t0246900-00	Rice	nucleus	81.52	81.82
TraesCS4D01G225200.1	Wheat	nucleus	75.72	80.38
HORVU4Hr1G063160.1	Barley	plastid	74.28	80.08
TraesCS4B01G224600.1	Wheat	plastid	75.36	79.39
TraesCS4A01G067300.1	Wheat	nucleus	76.45	79.32
PGSC0003DMT400033253	Potato	plastid	38.04	75.54
VIT_15s0048g00830.t01	Wine grape	nucleus	62.68	68.92
KRH65254	Soybean	plastid	56.88	62.55
CDY18932	Canola	plastid	56.16	61.75
KRH76282	Soybean	plastid	54.71	61.13
Bra004910.1-P	Field mustard	plastid	55.8	60.87
Solyc01g091420.1.1	Tomato	plastid	59.06	60.15
KXG38649	Sorghum	plastid	56.52	60.0
KRH00577	Soybean	plastid	50.72	59.83
AT2G45420.1	Thale cress	plastid	56.52	59.54
KRH40590	Soybean	plastid	49.64	59.05
CDY54923	Canola	cytosol, nucleus, plastid	47.46	58.48
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	47.46	58.48
AT4G00220.1	Thale cress	plastid	48.19	58.33
Bra040311.1-P	Field mustard	nucleus	54.71	58.3
CDY57109	Canola	plastid	54.71	58.08
CDY69735	Canola	cytosol, nucleus, plastid	47.1	58.04
CDY68635	Canola	nucleus	54.35	57.92
CDY07236	Canola	plastid	46.74	57.59
Bra037323.1-P	Field mustard	plastid	46.74	57.59
EER95498	Sorghum	cytosol, nucleus, plastid	30.07	49.4
EES07771	Sorghum	plastid	32.97	42.33
EES14059	Sorghum	mitochondrion	31.88	40.93
EER92849	Sorghum	mitochondrion	35.51	40.0
EES01535	Sorghum	plastid	31.52	39.01
GSMUA_Achr4P28810_001	Banana	nucleus	40.58	37.97
EER93325	Sorghum	plastid	20.29	31.11
OQU80868	Sorghum	peroxisome	21.01	28.86
OQU88465	Sorghum	nucleus	27.17	8.01

Protein Annotations

EnsemblPlants:EER92557	EnsemblPlantsGene:SORBI_3001G437300	EntrezGene:8054343	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	ProteinID:EER92557	ProteinID:EER92557.1	RefSeq:XP_002465559.1
SEG:seg	UniParc:UPI0001A826C9	UniProt:C5WQY6	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr1:+:71566224..71569045

Molecular Weight (calculated)

28373.6 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.357

Length

276 amino acids

Sequence
(BLAST)

001: MSAGGGTSTL GGGGPSGSGA SGGPGPGGSG GGGGGGGGPC GACKFLRRKC VSGCIFAPYF DSEQGAAHFA AVHKVFGASN VSKLLLQIPA HKRLDAVVTI
101: CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ AELTYLQAHL ATLELPSPPP LPAPPQMPLP GAFSISDLPS STSVPTTVDL SALFDPPPQQ PQWAVQAAQP
201: HHHHHHHQQP QQQQHHQLRQ PAPYGAPVRP GGGGPGMAES SGGGGDDLQS LARELLDRHR SGGVKLEQPP PPPHSR

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.