CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00577	Soybean	plastid	88.79	88.03
KRH76282	Soybean	plastid	63.79	59.92
VIT_15s0048g00830.t01	Wine grape	nucleus	64.66	59.76
KRH65254	Soybean	plastid	63.79	58.96
KRH19529	Soybean	plastid	30.6	58.68
CDY18932	Canola	plastid	62.07	57.37
Bra004910.1-P	Field mustard	plastid	62.07	56.92
GSMUA_Achr5P11330_001	Banana	plastid	57.76	55.6
AT2G45420.1	Thale cress	plastid	62.07	54.96
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	56.9	54.55
Bra040311.1-P	Field mustard	nucleus	59.91	53.67
CDY57109	Canola	plastid	59.91	53.46
CDY68635	Canola	nucleus	59.48	53.28
GSMUA_Achr2P11240_001	Banana	plastid	53.45	52.54
HORVU4Hr1G063160.1	Barley	plastid	57.76	52.34
Zm00001d028413_P001	Maize	plastid	58.19	51.92
Zm00001d047921_P001	Maize	plastid	59.05	51.7
TraesCS4D01G225200.1	Wheat	nucleus	57.76	51.54
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	56.9	51.36
TraesCS4B01G224600.1	Wheat	plastid	57.33	50.76
TraesCS4A01G067300.1	Wheat	nucleus	58.19	50.75
KRH76281	Soybean	cytosol, nucleus, plastid	42.67	50.0
EER92557	Sorghum	nucleus	59.05	49.64
Os03t0246900-00	Rice	nucleus	58.62	49.45
Zm00001d030364_P001	Maize	plastid	51.72	48.98
KRH65255	Soybean	cytosol, nucleus, plastid	43.53	47.64
Os10t0162600-00	Rice	nucleus	55.17	47.58
KXG38649	Sorghum	plastid	53.02	47.31
KRG95644	Soybean	nucleus	39.22	42.72
KRH67347	Soybean	plastid	37.93	41.31
KRH32155	Soybean	plastid	36.64	39.91
KRG95645	Soybean	mitochondrion, nucleus	34.91	38.94
KRH19530	Soybean	mitochondrion, nucleus	38.79	37.97
KRH67348	Soybean	nucleus	34.48	37.74
KRH32157	Soybean	mitochondrion, nucleus	38.79	37.66
KRH73761	Soybean	cytosol, nucleus, plastid	11.21	36.11
KRG94981	Soybean	nucleus	37.07	35.98
KRG97704	Soybean	mitochondrion	27.59	35.75
KRH14922	Soybean	mitochondrion	27.59	35.16
KRH73279	Soybean	mitochondrion	28.02	34.57
KRH71749	Soybean	cytosol, mitochondrion, nucleus	35.34	34.45
KRH31169	Soybean	mitochondrion	28.02	34.39
KRH32932	Soybean	cytosol, mitochondrion, nucleus	35.34	34.31
GSMUA_Achr4P28810_001	Banana	nucleus	40.95	32.2
KRH59547	Soybean	mitochondrion, nucleus, plastid	19.83	32.17
KRH73061	Soybean	mitochondrion, nucleus	30.17	31.82
KRH15078	Soybean	plastid	31.03	31.17
KRH14351	Soybean	mitochondrion	18.97	30.77

Protein Annotations

EMBL:ACUP02006044	EnsemblPlants:KRH40590	EnsemblPlantsGene:GLYMA_09G268700	EntrezGene:100790517	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31529	PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH40590	ProteinID:KRH40590.1
SEG:seg	UniParc:UPI0002338D44	UniProt:I1L6U2	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr9:-:48614539..48618629

Molecular Weight (calculated)

24359.0 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.044

Length

232 amino acids

Sequence
(BLAST)

001: MMSSGSGSGS SSGSPCGACK FLRRKCIPGC IFAPYFDSEQ GTSHFAAVHK VFGASNVSKL LLSIPVHRRL DTVITICYEA QSRIRDPVYG CVSHIFALQQ
101: QVVSLQAELS YLHGHLAQME LPQPPPPLPL PQTMAAPPPG FSIADLPSAT VAAAAATTYD LSSLFDPLGQ TSWAMQQRAI DPRQYNMAAA PSTATTGADI
201: QAVASDIPHR HGSPPSPPAS SSNASPSLSL SK

Best Arabidopsis Sequence Match ( AT2G45420.1 )
(BLAST)

001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR

Arabidopsis Description

LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.