Factsheet for GSMUA_Achr2P11240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11330_001	Banana	plastid	75.85	74.27
PGSC0003DMT400033253	Potato	plastid	41.53	70.5
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	72.03	70.25
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	72.03	66.15
VIT_15s0048g00830.t01	Wine grape	nucleus	69.07	64.94
AT4G00220.1	Thale cress	plastid	56.36	58.33
CDY54923	Canola	cytosol, nucleus, plastid	55.08	58.04
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	55.08	58.04
KRH65254	Soybean	plastid	61.44	57.77
CDY07236	Canola	plastid	54.66	57.59
CDY69735	Canola	cytosol, nucleus, plastid	54.66	57.59
Bra037323.1-P	Field mustard	plastid	54.66	57.59
CDY18932	Canola	plastid	61.02	57.37
Bra004910.1-P	Field mustard	plastid	61.44	57.31
KRH76282	Soybean	plastid	59.75	57.09
CDY57109	Canola	plastid	61.44	55.77
CDY68635	Canola	nucleus	61.02	55.6
Bra040311.1-P	Field mustard	nucleus	61.02	55.6
AT2G45420.1	Thale cress	plastid	61.44	55.34
Solyc01g091420.1.1	Tomato	plastid	63.14	54.98
KRH00577	Soybean	plastid	54.24	54.7
KRH40590	Soybean	plastid	52.54	53.45
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	39.41	48.19
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	40.68	44.86
GSMUA_Achr4P25190_001	Banana	mitochondrion	39.83	43.93
GSMUA_Achr10P...	Banana	mitochondrion	40.68	43.84
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	33.9	43.72
GSMUA_Achr1P06580_001	Banana	mitochondrion	38.56	43.54
GSMUA_Achr1P01350_001	Banana	nucleus	36.86	43.28
GSMUA_AchrUn_...	Banana	mitochondrion	40.25	42.04
GSMUA_AchrUn_...	Banana	mitochondrion	40.68	41.38
GSMUA_Achr11P...	Banana	mitochondrion	36.44	40.76
GSMUA_Achr8P14330_001	Banana	mitochondrion	38.98	39.32
GSMUA_Achr4P28810_001	Banana	nucleus	48.31	38.64
GSMUA_Achr11P...	Banana	mitochondrion	20.76	31.21

Protein Annotations

EnsemblPlants:GSMUA_Achr2P11240_001	EnsemblPlants:GSMUA_Achr2T11240_001	EnsemblPlantsGene:GSMUA_Achr2G11240_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF3	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002960CE5	UniProt:M0S715
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11240_001]

Coordinates

chr2:-:14184496..14185338

Molecular Weight (calculated)

24408.1 Da

IEP (calculated)

7.450

GRAVY (calculated)

-0.075

Length

236 amino acids

Sequence
(BLAST)

001: MSGSIGPNGG GGGGGGGGSG GGGGGGPCGA CKFLRRKCVT GCIFAPYFNS EQGAAHFAAV HKVFGASNAS KLLLHIPAHK RLDAVVTICY EAQARLRDPV
101: YGCVAHIFAL QQQVVNLHAE LSCLQAHLAT LELPTPPPSL ASPIPFSMSD LSSSSTLPST ADLSTLFDPP LLPSWPLQQQ QRPTLFMQQR STSTRSPSES
201: SGCGGGDLQE LARELLGRHC LGDVTAEPGV QESKSI

Best Arabidopsis Sequence Match ( AT4G00220.1 )
(BLAST)

001: MSSSGNPSSS SGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLHHVPEHK RPDAVVSICF EAQARLRDPI YGCVSHIVSL
101: QQQVVSLQTE LSYLQAHLAT LELPQPQPPQ VPVSSSGSLQ ALSITDLPTI SPSVYDLSSI FEPVMSSTWA MQQQPRPSDH LFGVPSSSNM GGGGELQALA
201: REFIHGGQMP AQPSPGTSGS ASSVIKRE

Arabidopsis Description

LBD30LOB domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:O81323]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.