Factsheet for GSMUA_Achr4P25190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	78.5	72.41
GSMUA_Achr1P06580_001	Banana	mitochondrion	54.67	55.98
GSMUA_Achr10P...	Banana	mitochondrion	56.54	55.25
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	59.81	55.17
KRG95645	Soybean	mitochondrion, nucleus	53.27	54.81
KRH67348	Soybean	nucleus	53.27	53.77
GSMUA_Achr11P...	Banana	mitochondrion	52.8	53.55
KRH19530	Soybean	mitochondrion, nucleus	58.41	52.74
KRH32157	Soybean	mitochondrion, nucleus	58.88	52.72
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	52.34	52.34
GSMUA_Achr8P14330_001	Banana	mitochondrion	53.27	48.72
GSMUA_AchrUn_...	Banana	mitochondrion	50.93	48.23
PGSC0003DMT400025142	Potato	nucleus	53.74	46.94
Solyc09g066270.2.1	Tomato	nucleus	52.8	46.31
EER92849	Sorghum	mitochondrion	52.8	46.12
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	41.59	46.11
Zm00001d027679_P001	Maize	cytosol, nucleus	52.34	45.9
GSMUA_Achr1P01350_001	Banana	nucleus	42.06	44.78
Zm00001d048401_P001	Maize	nucleus	48.13	44.02
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	37.38	43.72
Os03t0149100-01	Rice	mitochondrion	51.87	42.86
GSMUA_Achr2P11240_001	Banana	plastid	43.93	39.83
GSMUA_Achr5P11330_001	Banana	plastid	43.93	39.0
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	43.46	38.43
TraesCS4A01G415400.1	Wheat	nucleus	50.93	37.72
HORVU4Hr1G080160.1	Barley	plastid	50.0	37.68
TraesCS4D01G312800.1	Wheat	plastid	50.0	37.41
TraesCS4B01G316200.1	Wheat	nucleus, plastid	50.0	37.15
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	43.93	36.58
GSMUA_Achr11P...	Banana	mitochondrion	23.36	31.85
GSMUA_Achr4P28810_001	Banana	nucleus	39.25	28.47

Protein Annotations

EnsemblPlants:GSMUA_Achr4P25190_001	EnsemblPlants:GSMUA_Achr4T25190_001	EnsemblPlantsGene:GSMUA_Achr4G25190_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002963544
UniProt:M0SRY0	MapMan:15.5.24	:	:	:	:

Description

DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25190_001]

Coordinates

chr4:-:24775735..24776462

Molecular Weight (calculated)

23253.2 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.285

Length

214 amino acids

Sequence
(BLAST)

001: MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNFS KILMHLPVAD RSEAAITVSY EAQARLQDPV YGCVAHIFAL QQQVVNLQAQ
101: LSSLRAQAAQ GLGSSTAADR TPREDKPPPY QQDNQSFFRT ADGRTPPPFS STPSMDLDNV VNSRHYDVGG EHISFDDGSF AMASPGMQAS SWSSAYHHDM
201: EDLQSVALAY LGRS

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.