Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G312800.1 | Wheat | plastid | 90.66 | 91.61 |
| HORVU4Hr1G080160.1 | Barley | plastid | 88.58 | 90.14 |
| TraesCS4B01G316200.1 | Wheat | nucleus, plastid | 89.62 | 89.93 |
| Os03t0149100-01 | Rice | mitochondrion | 65.74 | 73.36 |
| EER92849 | Sorghum | mitochondrion | 61.94 | 73.06 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 61.59 | 72.95 |
| GSMUA_Achr4P25190_001 | Banana | mitochondrion | 37.72 | 50.93 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 38.75 | 48.28 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 38.75 | 48.28 |
| KRG95645 | Soybean | mitochondrion, nucleus | 34.6 | 48.08 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.91 | 46.45 |
| KRH67348 | Soybean | nucleus | 33.91 | 46.23 |
| TraesCS6A01G398400.1 | Wheat | plastid | 32.53 | 45.63 |
| KRH19530 | Soybean | mitochondrion, nucleus | 37.37 | 45.57 |
| TraesCS4A01G415300.1 | Wheat | plastid | 28.72 | 44.86 |
| KRH32157 | Soybean | mitochondrion, nucleus | 37.02 | 44.77 |
| GSMUA_Achr8P14330_001 | Banana | mitochondrion | 35.64 | 44.02 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 32.87 | 43.38 |
| PGSC0003DMT400025142 | Potato | nucleus | 36.33 | 42.86 |
| Solyc09g066270.2.1 | Tomato | nucleus | 35.99 | 42.62 |
| TraesCS6A01G053700.1 | Wheat | nucleus | 32.18 | 39.24 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 29.41 | 37.12 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 32.18 | 34.96 |
| TraesCS3A01G295100.1 | Wheat | nucleus | 27.34 | 34.2 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 20.07 | 32.4 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 20.07 | 30.85 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G415400.1 | EnsemblPlantsGene:TraesCS4A01G415400 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF4 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr4A:-:685380729..685381598
Molecular Weight (calculated)
30271.3 Da
IEP (calculated)
6.740
GRAVY (calculated)
-0.258
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGRPLHSN HPQQQQQPAI ATTAPERDST IGSPSDPAII TGRLMSMTGL GSPCGACKFL RRKCARGCVF APYFCHEQGA AHFAAIHKVF GASNVSKLLA
101: HLPIADRAEA AVTVSYEAQA RLRDPVYGCV AHIFALQQQV MTLQAQLASL KAHAAPAPQG MQHQDDVKGY VGGGAADQYG HGGAYQWHNG LGVGAAAAQQ
201: QCAYGGNGGA AAGHDSITAL LAGSAASDYM MYHALEQSAS DDDGHAAAAG FETADQSSFG TEESGWRSSS RYQDCEDLQS VAYAYLKRS
101: HLPIADRAEA AVTVSYEAQA RLRDPVYGCV AHIFALQQQV MTLQAQLASL KAHAAPAPQG MQHQDDVKGY VGGGAADQYG HGGAYQWHNG LGVGAAAAQQ
201: QCAYGGNGGA AAGHDSITAL LAGSAASDYM MYHALEQSAS DDDGHAAAAG FETADQSSFG TEESGWRSSS RYQDCEDLQS VAYAYLKRS
001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS
Arabidopsis Description
LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.