Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G132900.1 | Wheat | nucleus | 92.41 | 93.19 |
| TraesCS6B01G072200.1 | Wheat | nucleus | 91.98 | 91.98 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 73.0 | 79.0 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 74.26 | 78.22 |
| GSMUA_Achr1P01360_001 | Banana | mitochondrion, nucleus, plastid | 42.62 | 47.2 |
| KRG95645 | Soybean | mitochondrion, nucleus | 38.82 | 44.23 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 42.62 | 43.53 |
| KRH67348 | Soybean | nucleus | 38.4 | 42.92 |
| TraesCS4A01G415300.1 | Wheat | plastid | 32.07 | 41.08 |
| KRH19530 | Soybean | mitochondrion, nucleus | 40.51 | 40.51 |
| KRH32157 | Soybean | mitochondrion, nucleus | 40.08 | 39.75 |
| PGSC0003DMT400025142 | Potato | nucleus | 38.82 | 37.55 |
| TraesCS6A01G398400.1 | Wheat | plastid | 32.49 | 37.38 |
| Solyc09g066270.2.1 | Tomato | nucleus | 37.97 | 36.89 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 36.29 | 32.33 |
| TraesCS4A01G415400.1 | Wheat | nucleus | 39.24 | 32.18 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 29.96 | 31.0 |
| TraesCS3A01G295100.1 | Wheat | nucleus | 29.96 | 30.74 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 21.52 | 28.49 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 21.52 | 27.13 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G053700.1 | EnsemblPlantsGene:TraesCS6A01G053700 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF2 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr6A:+:27765272..27766309
Molecular Weight (calculated)
26080.7 Da
IEP (calculated)
6.495
GRAVY (calculated)
-0.318
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHFTSCKEQ EYTTSIDQVA GAMIGFSSPC GACKFLRRKC VSGCVFAPHF CHEQGAAHFG TIHKVFGASN VSKLLTGLPS IDRRKAAATI SYEAQARLHD
101: PVYGCVAHIF ALQQQAVNLQ AQLESLKAQA PQGYTNTCSV SSPEEDSIKA KVMAYQKGEA RMPRPAELCP AVKSESESYF GNDLMTCTSM QSSQDYNISH
201: VYTPDYTAPF NDEGIHSSTM LPVDIQEYLQ DNGNYWH
101: PVYGCVAHIF ALQQQAVNLQ AQLESLKAQA PQGYTNTCSV SSPEEDSIKA KVMAYQKGEA RMPRPAELCP AVKSESESYF GNDLMTCTSM QSSQDYNISH
201: VYTPDYTAPF NDEGIHSSTM LPVDIQEYLQ DNGNYWH
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
Arabidopsis Description
LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.