Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G053700.1 | Wheat | nucleus | 91.98 | 91.98 |
| TraesCSU01G132900.1 | Wheat | nucleus | 89.87 | 90.64 |
| TraesCS4B01G001200.1 | Wheat | nucleus | 81.43 | 80.75 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 75.11 | 79.11 |
| GSMUA_Achr1P01360_001 | Banana | mitochondrion, nucleus, plastid | 41.77 | 46.26 |
| KRG95645 | Soybean | mitochondrion, nucleus | 40.08 | 45.67 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 43.88 | 44.83 |
| KRH67348 | Soybean | nucleus | 39.66 | 44.34 |
| TraesCS4B01G316100.1 | Wheat | plastid | 33.76 | 42.78 |
| KRH19530 | Soybean | mitochondrion, nucleus | 42.19 | 42.19 |
| KRH32157 | Soybean | mitochondrion, nucleus | 41.35 | 41.0 |
| PGSC0003DMT400025142 | Potato | nucleus | 40.51 | 39.18 |
| Solyc09g066270.2.1 | Tomato | nucleus | 39.66 | 38.52 |
| TraesCS6B01G438700.1 | Wheat | plastid | 32.91 | 36.97 |
| TraesCS4B01G316200.1 | Wheat | nucleus, plastid | 40.51 | 33.33 |
| TraesCS4B01G224600.1 | Wheat | plastid | 35.44 | 32.06 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 28.69 | 29.69 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 20.68 | 29.17 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 21.94 | 27.37 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G072200.1 | EnsemblPlantsGene:TraesCS6B01G072200 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF2 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr6B:+:48545163..48546141
Molecular Weight (calculated)
26106.6 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.362
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHFTSCKEQ EYTTNIDQVA GAMTGFSSPC GACKFLRRKC VNGCVFAPHF CHEQGAAHFG AIHKVFGASN VSKLLTSLPA IDRREAAATI SYEAQARLHH
101: PVYGCVAHIF ALQQQAVNLQ AQLESLKAQA PQGYTNTYSA SSPEEDSIKA EVMACQKGEA RMPRPAELCP SVKSESESYF GNGLMTCNSM QSSQDYNISH
201: VYTPNYTAPF NDDGIHSSTM FPVDIQEYLQ ENGNYWH
101: PVYGCVAHIF ALQQQAVNLQ AQLESLKAQA PQGYTNTYSA SSPEEDSIKA EVMACQKGEA RMPRPAELCP SVKSESESYF GNGLMTCNSM QSSQDYNISH
201: VYTPNYTAPF NDDGIHSSTM FPVDIQEYLQ ENGNYWH
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
Arabidopsis Description
LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.