Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G001700.1 | Wheat | mitochondrion | 78.22 | 81.11 |
| TraesCS4B01G001200.1 | Wheat | nucleus | 85.33 | 80.33 |
| TraesCS4A01G312500.1 | Wheat | mitochondrion | 76.0 | 78.08 |
| TraesCSU01G132900.1 | Wheat | nucleus | 79.11 | 75.74 |
| TraesCS6B01G072200.1 | Wheat | nucleus | 79.11 | 75.11 |
| TraesCS6A01G053700.1 | Wheat | nucleus | 78.22 | 74.26 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 28.44 | 51.2 |
| GSMUA_Achr1P01360_001 | Banana | mitochondrion, nucleus, plastid | 45.33 | 47.66 |
| KRG95645 | Soybean | mitochondrion, nucleus | 43.56 | 47.12 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 47.56 | 46.12 |
| KRH67348 | Soybean | nucleus | 42.67 | 45.28 |
| HORVU4Hr1G080150.1 | Barley | plastid | 36.89 | 45.11 |
| KRH19530 | Soybean | mitochondrion, nucleus | 45.33 | 43.04 |
| KRH32157 | Soybean | mitochondrion, nucleus | 45.33 | 42.68 |
| PGSC0003DMT400025142 | Potato | nucleus | 42.67 | 39.18 |
| HORVU0Hr1G017670.2 | Barley | plastid | 36.0 | 38.57 |
| Solyc09g066270.2.1 | Tomato | nucleus | 41.78 | 38.52 |
| HORVU4Hr1G080160.1 | Barley | plastid | 44.0 | 34.86 |
| HORVU4Hr1G063160.1 | Barley | plastid | 39.56 | 34.77 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 32.44 | 32.02 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 32.0 | 30.9 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 11.56 | 29.89 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 21.78 | 27.68 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G000880.4 | EnsemblPlantsGene:HORVU4Hr1G000880 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF2 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000294C157 | UniProt:M0WK43 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chrchr4H:-:1331914..1333263
Molecular Weight (calculated)
24947.4 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.286
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQFTGCKEQ EYTTNIDQAP EAMTGFSSPC GACKFLRRKC VSGCVFAPHF CHEQGAAHFA AIHKVFGASN ASKLLMSLPA TDRREAAVTI SYEAQARLHD
101: PVYGCVAHIF ALQQQVVTLQ AQLESLKTGA PQLVSSLEED SIKAKIMAYE KGEARMPQLG ESVKIESESY FGDDVMACTS MPYSQGYSSH IYTTDYTDSF
201: NDDSINRSTM FPVDMQEYLQ ENGYY
101: PVYGCVAHIF ALQQQVVTLQ AQLESLKTGA PQLVSSLEED SIKAKIMAYE KGEARMPQLG ESVKIESESY FGDDVMACTS MPYSQGYSSH IYTTDYTDSF
201: NDDSINRSTM FPVDMQEYLQ ENGYY
001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
Arabidopsis Description
LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.