Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G020290.1 | |
| HORVU7Hr1G046690.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | HORVU0Hr1G020290.1 | AT4G00210.1 | 22822207 |
| AT4G00220.1 | HORVU7Hr1G046690.1 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G225200.1 | Wheat | nucleus | 98.05 | 96.54 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 99.22 | 95.49 |
| TraesCS4B01G224600.1 | Wheat | plastid | 97.27 | 95.04 |
| Zm00001d047921_P001 | Maize | plastid | 80.08 | 77.36 |
| Zm00001d028413_P001 | Maize | plastid | 76.56 | 75.38 |
| EER92557 | Sorghum | nucleus | 80.08 | 74.28 |
| Os03t0246900-00 | Rice | nucleus | 79.69 | 74.18 |
| PGSC0003DMT400033253 | Potato | plastid | 40.23 | 74.1 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 31.25 | 64.0 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 62.11 | 63.35 |
| KRH65254 | Soybean | plastid | 57.81 | 58.96 |
| KRH00577 | Soybean | plastid | 53.12 | 58.12 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 50.78 | 58.04 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 50.78 | 58.04 |
| CDY18932 | Canola | plastid | 56.64 | 57.77 |
| KRH40590 | Soybean | plastid | 52.34 | 57.76 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 50.39 | 57.59 |
| KRH76282 | Soybean | plastid | 55.47 | 57.49 |
| AT4G00220.1 | Thale cress | plastid | 51.17 | 57.46 |
| Bra004910.1-P | Field mustard | plastid | 56.64 | 57.31 |
| Bra037323.1-P | Field mustard | plastid | 50.0 | 57.14 |
| CDY07236 | Canola | plastid | 50.0 | 57.14 |
| AT2G45420.1 | Thale cress | plastid | 57.03 | 55.73 |
| Solyc01g091420.1.1 | Tomato | plastid | 58.98 | 55.72 |
| Bra040311.1-P | Field mustard | nucleus | 55.86 | 55.21 |
| CDY57109 | Canola | plastid | 55.86 | 55.0 |
| CDY68635 | Canola | nucleus | 55.47 | 54.83 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 42.19 | 47.37 |
| HORVU0Hr1G017670.2 | Barley | plastid | 35.16 | 42.86 |
| HORVU4Hr1G080150.1 | Barley | plastid | 28.91 | 40.22 |
| HORVU4Hr1G000880.4 | Barley | cytosol, nucleus, plastid | 34.77 | 39.56 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 12.89 | 37.93 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 43.36 | 37.63 |
| HORVU3Hr1G075370.2 | Barley | nucleus | 31.25 | 34.33 |
| HORVU4Hr1G080160.1 | Barley | plastid | 35.94 | 32.39 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 19.92 | 28.81 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G063160.1 | EnsemblPlantsGene:HORVU4Hr1G063160 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B471925 | UniProt:A0A287PBQ6 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chrchr4H:-:529392281..529394817
Molecular Weight (calculated)
26597.8 Da
IEP (calculated)
7.852
GRAVY (calculated)
-0.174
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGVGSSTL GGCGGPSGSG SGGGGGGLGG GGGGPCGACK FLRRKCVSEC IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL LLQIPAHKRL DAVVTICYEA
101: QARLRDPVYG CVAHIFALQQ QVVNLQAELT YLQTHLATLE LPSPPLPAAP QLPMAMPAQF SISDLPSTTN IPTTIDLSAL FEPPAQPQWA LQQHHQHQLR
201: QPSYGAMAHR GGSSMAEGSA GSGSGDLQTL ARELLDRHGR SGVKPELQPP PPPHPR
101: QARLRDPVYG CVAHIFALQQ QVVNLQAELT YLQTHLATLE LPSPPLPAAP QLPMAMPAQF SISDLPSTTN IPTTIDLSAL FEPPAQPQWA LQQHHQHQLR
201: QPSYGAMAHR GGSSMAEGSA GSGSGDLQTL ARELLDRHGR SGVKPELQPP PPPHPR
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.