Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028413_P001 | Maize | plastid | 87.55 | 89.23 |
| EER92557 | Sorghum | nucleus | 90.94 | 87.32 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 78.87 | 80.38 |
| HORVU4Hr1G063160.1 | Barley | plastid | 77.36 | 80.08 |
| Os03t0246900-00 | Rice | nucleus | 83.02 | 80.0 |
| TraesCS4B01G224600.1 | Wheat | plastid | 78.49 | 79.39 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 79.62 | 79.32 |
| PGSC0003DMT400033253 | Potato | plastid | 38.87 | 74.1 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 63.77 | 67.33 |
| CDY18932 | Canola | plastid | 58.11 | 61.35 |
| KRH65254 | Soybean | plastid | 57.74 | 60.96 |
| Bra004910.1-P | Field mustard | plastid | 58.11 | 60.87 |
| KRH00577 | Soybean | plastid | 52.83 | 59.83 |
| KRH76282 | Soybean | plastid | 55.47 | 59.51 |
| AT2G45420.1 | Thale cress | plastid | 58.49 | 59.16 |
| KRH40590 | Soybean | plastid | 51.7 | 59.05 |
| Solyc01g091420.1.1 | Tomato | plastid | 60.38 | 59.04 |
| Zm00001d030364_P001 | Maize | plastid | 54.34 | 58.78 |
| Bra040311.1-P | Field mustard | nucleus | 56.6 | 57.92 |
| CDY57109 | Canola | plastid | 56.6 | 57.69 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 48.68 | 57.59 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 48.68 | 57.59 |
| CDY68635 | Canola | nucleus | 56.23 | 57.53 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 48.3 | 57.14 |
| AT4G00220.1 | Thale cress | plastid | 49.06 | 57.02 |
| CDY07236 | Canola | plastid | 47.92 | 56.7 |
| Bra037323.1-P | Field mustard | plastid | 47.92 | 56.7 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 30.94 | 49.1 |
| Zm00001d051891_P001 | Maize | plastid | 33.96 | 41.67 |
| Zm00001d031882_P001 | Maize | plastid | 32.83 | 40.47 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 36.6 | 39.75 |
| Zm00001d048401_P001 | Maize | nucleus | 33.58 | 38.03 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 42.26 | 37.97 |
| Zm00001d043311_P001 | Maize | plastid | 31.32 | 37.56 |
| Zm00001d034384_P001 | Maize | plastid | 21.13 | 34.15 |
| Zm00001d031544_P001 | Maize | plastid | 23.02 | 29.61 |
| Zm00001d007919_P001 | Maize | mitochondrion | 28.68 | 11.13 |
| Zm00001d018832_P001 | Maize | nucleus | 25.28 | 10.91 |
Protein Annotations
| EMBL:BT036180 | EnsemblPlants:Zm00001d047921_P001 | EnsemblPlants:Zm00001d047921_T001 | EnsemblPlantsGene:Zm00001d047921 | EntrezGene:100193815 | InterPro:IPR004883 |
| InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQL08055.1 |
| SEG:seg | UniParc:UPI00017B73AC | UniProt:B4FGE2 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 42LOB domain-containing protein 31
Coordinates
chr9:+:145465257..145467375
Molecular Weight (calculated)
27063.2 Da
IEP (calculated)
8.174
GRAVY (calculated)
-0.180
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGGGAGAS TLGGGGPSGS GSGSGGSGAG VIGGGGGGGA GGPCGACKFL RRKCVSGCIF APYFDSEQGA AHFAAVHKVF GASNVSKLLL QIPPHKRLDA
101: VVTICYEAQA RLRDPVYGCV AHIFALQQQV VNLQAELTYL QAHLATLELP SPPPLPAPPQ MPMPGPFSIA DLPSSTSVPT TVDLSTLFDP PPQWAVHQPH
201: HHHQQLQQHQ LRQPAPYGAP VRPGGGMAAE SSGGGSGDLQ SLARELLDRH RSGGVKLEPP PPHSR
101: VVTICYEAQA RLRDPVYGCV AHIFALQQQV VNLQAELTYL QAHLATLELP SPPPLPAPPQ MPMPGPFSIA DLPSSTSVPT TVDLSTLFDP PPQWAVHQPH
201: HHHQQLQQHQ LRQPAPYGAP VRPGGGMAAE SSGGGSGDLQ SLARELLDRH RSGGVKLEPP PPHSR
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.