Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_15s0048g00840.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00220.1 | VIT_15s0048g00840.t01 | AT4G00210.1 | 22822207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033253 | Potato | plastid | 41.43 | 74.82 |
| GSMUA_Achr5P11330_001 | Banana | plastid | 71.71 | 74.69 |
| GSMUA_Achr1P02520_001 | Banana | cytosol, nucleus, plastid | 69.72 | 72.31 |
| GSMUA_Achr2P11240_001 | Banana | plastid | 64.94 | 69.07 |
| Solyc01g091420.1.1 | Tomato | plastid | 74.5 | 69.0 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 69.72 | 68.09 |
| KRH00577 | Soybean | plastid | 62.95 | 67.52 |
| KRH65254 | Soybean | plastid | 66.14 | 66.14 |
| KRH76282 | Soybean | plastid | 64.14 | 65.18 |
| KRH40590 | Soybean | plastid | 59.76 | 64.66 |
| CDY18932 | Canola | plastid | 64.54 | 64.54 |
| Zm00001d028413_P001 | Maize | plastid | 66.53 | 64.23 |
| Zm00001d047921_P001 | Maize | plastid | 67.33 | 63.77 |
| Bra004910.1-P | Field mustard | plastid | 64.14 | 63.64 |
| CDY57109 | Canola | plastid | 65.74 | 63.46 |
| AT4G00220.1 | Thale cress | plastid | 57.37 | 63.16 |
| EER92557 | Sorghum | nucleus | 68.92 | 62.68 |
| AT2G45420.1 | Thale cress | plastid | 65.34 | 62.6 |
| Bra040311.1-P | Field mustard | nucleus | 64.54 | 62.55 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 55.78 | 62.5 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 55.78 | 62.5 |
| CDY07236 | Canola | plastid | 55.78 | 62.5 |
| Bra037323.1-P | Field mustard | plastid | 55.78 | 62.5 |
| TraesCS4D01G225200.1 | Wheat | nucleus | 64.54 | 62.31 |
| Os03t0246900-00 | Rice | nucleus | 68.13 | 62.18 |
| CDY68635 | Canola | nucleus | 64.14 | 62.16 |
| HORVU4Hr1G063160.1 | Barley | plastid | 63.35 | 62.11 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 54.98 | 61.61 |
| TraesCS4B01G224600.1 | Wheat | plastid | 64.14 | 61.45 |
| TraesCS4A01G067300.1 | Wheat | nucleus | 64.94 | 61.28 |
| Os10t0162600-00 | Rice | nucleus | 62.15 | 57.99 |
| VIT_15s0048g00840.t01 | Wine grape | cytosol, nucleus, plastid | 43.43 | 56.19 |
| KXG38649 | Sorghum | plastid | 58.17 | 56.15 |
| Zm00001d030364_P001 | Maize | plastid | 54.58 | 55.92 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 36.65 | 47.18 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 40.24 | 43.53 |
| VIT_13s0019g03810.t01 | Wine grape | plastid | 22.71 | 41.01 |
| GSMUA_Achr4P28810_001 | Banana | nucleus | 47.01 | 40.0 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 36.65 | 38.66 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 25.9 | 38.01 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 31.87 | 36.53 |
| VIT_13s0019g03800.t01 | Wine grape | plastid | 19.92 | 34.01 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 20.72 | 33.99 |
| VIT_13s0019g03830.t01 | Wine grape | plastid | 21.12 | 31.36 |
| VIT_13s0019g03820.t01 | Wine grape | nucleus, plastid | 23.9 | 31.25 |
| VIT_13s0019g03840.t01 | Wine grape | nucleus, plastid | 23.51 | 30.41 |
Protein Annotations
| EntrezGene:100255815 | wikigene:100255815 | MapMan:15.5.24 | ProteinID:CCB61390 | ProteinID:CCB61390.1 | UniProt:F6I373 |
| EMBL:FN596739 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100255815 | wikigene:LOC100255815 | PFAM:PF03195 |
| PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF3 | TIGR:TC68473 | UniParc:UPI00015CB2EB | ArrayExpress:VIT_15s0048g00830 |
| EnsemblPlantsGene:VIT_15s0048g00830 | EnsemblPlants:VIT_15s0048g00830.t01 | unigene:Vvi.11929 | RefSeq:XP_002279521 | RefSeq:XP_002279521.1 | SEG:seg |
Description
No Description!
Coordinates
chr15:-:14983081..14985200
Molecular Weight (calculated)
25820.8 Da
IEP (calculated)
7.840
GRAVY (calculated)
-0.142
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSANTSSSGG GGGGGGGGST SGGGGGGGPC GACKFLRRKC VVGCIFAPYF DPEQGAAHFA AVHKVFGASN VSKLLGHIPV HKRLDAVVTI CYEAQARLRD
101: PVYGCVAHIF ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PPPPPPPVMV TPPSLSISDL PSASSMPPTY DLSSLFDPMV QPSSWPMQQH RQIDPRQFGG
201: SRGPTDLPST AGGSGGGDLQ ALARELLHRH SSALGGHVPC TESSMPPSIS K
101: PVYGCVAHIF ALQQQVVNLQ AELSYLQAHL ATLELPSPPP PPPPPPPVMV TPPSLSISDL PSASSMPPTY DLSSLFDPMV QPSSWPMQQH RQIDPRQFGG
201: SRGPTDLPST AGGSGGGDLQ ALARELLHRH SSALGGHVPC TESSMPPSIS K
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
Arabidopsis Description
LBD18LBD18 [Source:UniProtKB/TrEMBL;Acc:A0A178VVX7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.