Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 59.79 | 60.73 |
| KRH76281 | Soybean | cytosol, nucleus, plastid | 61.86 | 60.61 |
| HORVU0Hr1G020290.1 | Barley | cytosol, plastid | 38.14 | 59.2 |
| KRH65255 | Soybean | cytosol, nucleus, plastid | 63.4 | 58.02 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 56.19 | 57.98 |
| Bra040312.1-P | Field mustard | cytosol, nucleus, plastid | 50.0 | 57.74 |
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 54.64 | 56.38 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 54.64 | 56.38 |
| CDY37038 | Canola | mitochondrion | 50.0 | 54.49 |
| CDY57108 | Canola | mitochondrion | 50.0 | 54.49 |
| Solyc01g091400.2.1 | Tomato | plastid | 46.39 | 53.89 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 36.6 | 53.38 |
| AT4G00210.1 | Thale cress | nucleus | 56.19 | 49.55 |
| CDY07237 | Canola | nucleus | 45.88 | 46.11 |
| CDY67746 | Canola | nucleus | 52.06 | 45.5 |
| Bra037322.1-P | Field mustard | nucleus | 52.06 | 45.5 |
| VIT_15s0048g00830.t01 | Wine grape | nucleus | 56.19 | 43.43 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 42.27 | 42.05 |
| HORVU7Hr1G046690.1 | Barley | cytosol, nucleus, plastid | 48.45 | 41.23 |
| TraesCS7A01G228900.1 | Wheat | cytosol, nucleus, plastid | 46.91 | 39.74 |
| VIT_13s0019g03810.t01 | Wine grape | plastid | 28.35 | 39.57 |
| TraesCS7B01G195100.1 | Wheat | cytosol, nucleus, plastid | 45.36 | 38.43 |
| TraesCS7D01G229900.1 | Wheat | cytosol, nucleus, plastid | 45.36 | 38.43 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 31.96 | 36.26 |
| VIT_07s0005g03020.t01 | Wine grape | mitochondrion, nucleus | 42.78 | 35.78 |
| VIT_13s0019g02060.t01 | Wine grape | mitochondrion, nucleus | 37.63 | 33.33 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 40.72 | 33.19 |
| VIT_13s0019g03830.t01 | Wine grape | plastid | 27.32 | 31.36 |
| VIT_13s0019g03800.t01 | Wine grape | plastid | 23.71 | 31.29 |
| VIT_13s0019g03820.t01 | Wine grape | nucleus, plastid | 30.41 | 30.73 |
| VIT_13s0019g03840.t01 | Wine grape | nucleus, plastid | 30.41 | 30.41 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 23.71 | 30.07 |
Protein Annotations
| ArrayExpress:VIT_15s0048g00840 | EMBL:FN596739 | EnsemblPlants:VIT_15s0048g00840.t01 | EnsemblPlantsGene:VIT_15s0048g00840 | EntrezGene:100248994 | EntrezGene:LOC100248994 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF7 | PFAM:PF03195 |
| PFscan:PS50891 | ProteinID:CBI38860 | ProteinID:CBI38860.3 | RefSeq:XP_002273687 | RefSeq:XP_002273687.2 | SEG:seg |
| UniParc:UPI00015CB2EA | UniProt:D7U7T1 | wikigene:100248994 | wikigene:LOC100248994 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr15:+:14992324..14994935
Molecular Weight (calculated)
21044.2 Da
IEP (calculated)
6.992
GRAVY (calculated)
-0.121
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGSKGDGGG PCGACKFLRR KCVKGCVFAP YFDSDQGTAH FAAVHKVFGA SNASKLLTGI PAHKRLDAVV TLCYEALARL RDPVYGCVAH VFTLQQQVMN
101: LQAELAFIQA RLSTLQRIPS LAPPPLLPES APQPNLQSDF FNVPLQSHEA SMEAADFCNN SMDRELEDGD LQTLAQEFVS RFLPGVKVRD SSSN
101: LQAELAFIQA RLSTLQRIPS LAPPPLLPES APQPNLQSDF FNVPLQSHEA SMEAADFCNN SMDRELEDGD LQTLAQEFVS RFLPGVKVRD SSSN
001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T
Arabidopsis Description
LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.