Factsheet for Bra004908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74738	Canola	cytosol, nucleus, plastid	100.0	100.0
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	72.87	81.55
AT2G45410.1	Thale cress	cytosol, nucleus, plastid	80.32	79.06
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	56.38	54.64
HORVU0Hr1G020290.1	Barley	cytosol, plastid	32.45	48.8
Solyc01g091400.2.1	Tomato	plastid	43.09	48.5
KRH76281	Soybean	cytosol, nucleus, plastid	51.06	48.48
KRH65255	Soybean	cytosol, nucleus, plastid	53.19	47.17
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	31.38	44.36
Bra037322.1-P	Field mustard	nucleus	50.0	42.34
Bra001087.1-P	Field mustard	plastid	26.6	41.67
Bra037323.1-P	Field mustard	plastid	44.15	37.05
Bra009161.1-P	Field mustard	nucleus	35.64	36.61
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	42.55	35.71
Bra025217.1-P	Field mustard	cytosol	20.21	35.51
TraesCS7A01G228900.1	Wheat	cytosol, nucleus, plastid	42.55	34.93
HORVU7Hr1G046690.1	Barley	cytosol, nucleus, plastid	42.02	34.65
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	42.02	34.5
Bra018260.1-P	Field mustard	nucleus	35.11	34.2
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	41.49	34.06
Bra004910.1-P	Field mustard	plastid	44.15	32.81
Bra014581.1-P	Field mustard	mitochondrion, nucleus	37.77	32.42
Bra040311.1-P	Field mustard	nucleus	44.15	32.05
Bra034867.1-P	Field mustard	plastid	29.26	31.98
Bra000257.1-P	Field mustard	nucleus	39.89	31.51
Bra004693.1-P	Field mustard	plastid	39.89	30.74
Bra016877.1-P	Field mustard	nucleus	39.36	30.08
Bra007385.1-P	Field mustard	plastid	35.64	29.78
Bra021737.1-P	Field mustard	cytosol	36.7	28.87
Bra016876.1-P	Field mustard	nucleus	38.83	27.65
Bra036436.1-P	Field mustard	plastid	38.83	26.55
Bra032938.1-P	Field mustard	nucleus	25.53	16.33

Protein Annotations

EnsemblPlants:Bra004908.1	EnsemblPlants:Bra004908.1-P	EnsemblPlantsGene:Bra004908	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002547F1D
UniProt:M4CL22	MapMan:15.5.24	:	:	:	:

Description

AT2G45410 (E=2e-067) LBD19 | LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)

Coordinates

chrA05:-:2423168..2423825

Molecular Weight (calculated)

20739.8 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.256

Length

188 amino acids

Sequence
(BLAST)

001: MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM LLRLPLNKRH EAVSTLCYEA LARLRDPVYG SVGHLLSLQH
101: QVMNLQAEIA HVQARLSAFQ RVSIIPPQQM QQPPHNNEYP VEQTNLDFVW EEEQLPQAGN EDGEFQELAM QFVSKYLTEV KLPACTFG

Best Arabidopsis Sequence Match ( AT2G45410.1 )
(BLAST)

001: MMTGNLNGGG RGGEGPCGAC KFLRRKCVKG CVFAPYFDAE QGTARFAAVH KVFGASNASK MLLRLPLHKR LDAVVTLCYE AMARIRDPVY GSVGHLFSLQ
101: HQVMNLQAEL AHVQARLSTI QRFPLQSPQQ MQPPSFDPAH NNEYAMEPSN LDSVWGEEHL LQDGTGDGDF QELASQFVSR YLPAVKLPAC T

Arabidopsis Description

LBD19LBD19 [Source:UniProtKB/TrEMBL;Acc:A0A178VSY1]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.