Factsheet for Bra018260.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10793	Canola	nucleus	93.26	100.0
CDY24760	Canola	nucleus	89.12	95.56
AT2G31310.1	Thale cress	nucleus	76.68	78.72
Bra021737.1-P	Field mustard	cytosol	75.65	61.09
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	35.23	40.48
Bra001087.1-P	Field mustard	plastid	24.87	40.0
Bra014581.1-P	Field mustard	mitochondrion, nucleus	44.56	39.27
Bra009161.1-P	Field mustard	nucleus	35.75	37.7
Bra007385.1-P	Field mustard	plastid	43.01	36.89
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	34.2	35.11
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	39.9	34.38
Bra037323.1-P	Field mustard	plastid	39.38	33.93
Bra004693.1-P	Field mustard	plastid	41.97	33.2
Bra000257.1-P	Field mustard	nucleus	40.41	32.77
Bra016877.1-P	Field mustard	nucleus	40.93	32.11
Bra016876.1-P	Field mustard	nucleus	43.52	31.82
Bra025217.1-P	Field mustard	cytosol	17.1	30.84
Bra037322.1-P	Field mustard	nucleus	35.23	30.63
Bra034867.1-P	Field mustard	plastid	26.94	30.23
Bra004910.1-P	Field mustard	plastid	38.86	29.64
Bra040311.1-P	Field mustard	nucleus	39.38	29.34
Bra036436.1-P	Field mustard	plastid	38.34	26.91
Bra032938.1-P	Field mustard	nucleus	20.21	13.27

Protein Annotations

EnsemblPlants:Bra018260.1	EnsemblPlants:Bra018260.1-P	EnsemblPlantsGene:Bra018260	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025479C7	UniProt:M4DP20	MapMan:15.5.24

Description

AT2G31310 (E=3e-051) LBD14 | LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14)

Coordinates

chrA05:-:6977723..6978406

Molecular Weight (calculated)

21603.8 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.093

Length

193 amino acids

Sequence
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSANFGAI HKVFGASNFS KLISNLPVHD RCEAVRTISY EAQSRLHDPI YGCVSQIFSL QQQCAYKLLG
101: LLVCVKVVSL QAQVVLLREQ ASRKFPQEDC MEQGKVVAQD MPQDLHNWFH QVVSDSNLNQ MSDVASTTMD RNESFCSSSE SLYYPEVMFP WSV

Best Arabidopsis Sequence Match ( AT2G31310.1 )
(BLAST)

001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV

Arabidopsis Description

LBD14LOB domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.