Factsheet for Bra034867.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08551	Canola	plastid	98.26	98.26
CDY00994	Canola	plastid	97.09	97.66
AT3G11090.1	Thale cress	mitochondrion	86.63	90.3
VIT_13s0067g01450.t01	Wine grape	plastid	58.14	58.48
KRG97704	Soybean	mitochondrion	56.98	54.75
KRH14922	Soybean	mitochondrion	56.4	53.3
Solyc03g095940.1.1	Tomato	plastid	51.74	52.35
KRH31169	Soybean	mitochondrion	56.98	51.85
KRH73279	Soybean	mitochondrion	56.4	51.6
PGSC0003DMT400071281	Potato	plastid	52.33	50.85
Bra001087.1-P	Field mustard	plastid	22.67	32.5
Bra025217.1-P	Field mustard	cytosol	19.77	31.78
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	29.65	30.36
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	31.98	29.26
Bra037322.1-P	Field mustard	nucleus	35.47	27.48
Bra018260.1-P	Field mustard	nucleus	30.23	26.94
Bra009161.1-P	Field mustard	nucleus	27.33	25.68
Bra000257.1-P	Field mustard	nucleus	33.72	24.37
Bra037323.1-P	Field mustard	plastid	31.4	24.11
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	31.4	24.11
Bra014581.1-P	Field mustard	mitochondrion, nucleus	29.65	23.29
Bra004693.1-P	Field mustard	plastid	32.56	22.95
Bra016877.1-P	Field mustard	nucleus	31.98	22.36
Bra007385.1-P	Field mustard	plastid	28.49	21.78
Bra021737.1-P	Field mustard	cytosol	30.23	21.76
Bra004910.1-P	Field mustard	plastid	31.98	21.74
Bra040311.1-P	Field mustard	nucleus	31.98	21.24
Bra016876.1-P	Field mustard	nucleus	30.81	20.08
Bra036436.1-P	Field mustard	plastid	30.81	19.27
Bra032938.1-P	Field mustard	nucleus	24.42	14.29

Protein Annotations

EnsemblPlants:Bra034867.1	EnsemblPlants:Bra034867.1-P	EnsemblPlantsGene:Bra034867	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF24	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000254774F
UniProt:M4F1C1	MapMan:15.5.24	:	:	:	:

Description

AT3G11090 (E=3e-068) LBD21 | LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)

Coordinates

chrA05:-:21803639..21804157

Molecular Weight (calculated)

18766.5 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.057

Length

172 amino acids

Sequence
(BLAST)

001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP HFRSSDQITF AKVHKVFGAS NVSKLLSEVP EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDIAVARNR LLAHNAAGGV NNNNSHLLVS PLVDDASQLA AFLDLVPYSD LMLLDGSGLD AYLFDIGQPP FV

Best Arabidopsis Sequence Match ( AT3G11090.1 )
(BLAST)

001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV

Arabidopsis Description

LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.