Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g095940.1.1 | Tomato | plastid | 89.83 | 93.53 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 60.45 | 62.57 |
| KRG97704 | Soybean | mitochondrion | 57.06 | 56.42 |
| KRH14922 | Soybean | mitochondrion | 57.63 | 56.04 |
| KRH73279 | Soybean | mitochondrion | 58.76 | 55.32 |
| AT3G11090.1 | Thale cress | mitochondrion | 51.41 | 55.15 |
| KRH31169 | Soybean | mitochondrion | 58.76 | 55.03 |
| CDY00994 | Canola | plastid | 50.85 | 52.63 |
| Bra034867.1-P | Field mustard | plastid | 50.85 | 52.33 |
| CDY08551 | Canola | plastid | 50.85 | 52.33 |
| PGSC0003DMT400033253 | Potato | plastid | 27.68 | 35.25 |
| PGSC0003DMT400033221 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 24.29 | 32.33 |
| PGSC0003DMT400051680 | Potato | nucleus | 34.46 | 31.28 |
| PGSC0003DMT400097267 | Potato | cytosol, mitochondrion, plastid | 23.73 | 27.1 |
| PGSC0003DMT400025135 | Potato | nucleus | 33.33 | 26.7 |
| PGSC0003DMT400025142 | Potato | nucleus | 32.2 | 23.27 |
| PGSC0003DMT400057829 | Potato | nucleus | 30.51 | 22.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071281 | EnsemblPlantsGene:PGSC0003DMG400027718 | EntrezGene:102578348 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF24 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400027718 | RefSeq:XP_006356469.1 | UniParc:UPI000294FCF6 |
| UniProt:M1CNG6 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027718]
Coordinates
chr3:-:35463315..35464267
Molecular Weight (calculated)
19806.3 Da
IEP (calculated)
6.746
GRAVY (calculated)
-0.388
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSNEPRSSS SCAACKFLKR RCTTTCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP QDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL
101: QHDLMVTKAH LAYYEAKPSS TTSNCSLLDY DPLNVNIINT PSFFADTSGG FLDSFSQNTF AMDQTGSNNE FGQFPFP
101: QHDLMVTKAH LAYYEAKPSS TTSNCSLLDY DPLNVNIINT PSFFADTSGG FLDSFSQNTF AMDQTGSNNE FGQFPFP
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
Arabidopsis Description
LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.