Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00994 | Canola | plastid | 90.91 | 87.72 |
| CDY08551 | Canola | plastid | 90.3 | 86.63 |
| Bra034867.1-P | Field mustard | plastid | 90.3 | 86.63 |
| VIT_13s0067g01450.t01 | Wine grape | plastid | 63.03 | 60.82 |
| KRG97704 | Soybean | mitochondrion | 60.0 | 55.31 |
| KRH14922 | Soybean | mitochondrion | 59.39 | 53.85 |
| Solyc03g095940.1.1 | Tomato | plastid | 55.15 | 53.53 |
| KRH73279 | Soybean | mitochondrion | 60.0 | 52.66 |
| KRH31169 | Soybean | mitochondrion | 60.0 | 52.38 |
| PGSC0003DMT400071281 | Potato | plastid | 55.15 | 51.41 |
| AT3G26620.1 | Thale cress | mitochondrion | 29.09 | 39.67 |
| AT3G26660.1 | Thale cress | mitochondrion | 29.09 | 39.67 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 30.3 | 28.25 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 32.12 | 27.75 |
| AT4G00210.1 | Thale cress | nucleus | 35.76 | 26.82 |
| AT2G31310.1 | Thale cress | nucleus | 29.09 | 25.53 |
| AT4G00220.1 | Thale cress | plastid | 34.55 | 25.0 |
| AT3G58190.1 | Thale cress | plastid | 32.12 | 24.31 |
| AT2G42430.1 | Thale cress | plastid | 34.55 | 23.27 |
| AT2G42440.1 | Thale cress | mitochondrion, nucleus | 32.73 | 22.13 |
| AT2G45420.1 | Thale cress | plastid | 34.55 | 21.76 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 32.73 | 19.78 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:820280 | UniProt:A0A178V6L2 | ProteinID:AAF01513.1 | ProteinID:AAG50983.1 | EMBL:AB473845 |
| ProteinID:AEE75001.1 | ArrayExpress:AT3G11090 | EnsemblPlantsGene:AT3G11090 | RefSeq:AT3G11090 | TAIR:AT3G11090 | RefSeq:AT3G11090-TAIR-G |
| EnsemblPlants:AT3G11090.1 | TAIR:AT3G11090.1 | ncoils:Coil | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD21 |
| InterPro:LOB | RefSeq:NP_187720.1 | ProteinID:OAP01889.1 | PFAM:PF03195 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF24 |
| UniProt:Q9SRL8 | UniParc:UPI00000A4BB6 | : | : | : | : |
Description
LBD21LBD21 [Source:UniProtKB/TrEMBL;Acc:A0A178V6L2]
Coordinates
chr3:+:3474922..3475848
Molecular Weight (calculated)
18160.8 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.095
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
101: QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST NLDAYLYDLG QPPFV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.