Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14832 | Canola | mitochondrion, nucleus | 63.93 | 78.39 |
| AT3G58190.1 | Thale cress | plastid | 58.61 | 65.6 |
| CDY47970 | Canola | nucleus | 63.11 | 58.33 |
| Bra016876.1-P | Field mustard | nucleus | 62.3 | 57.58 |
| AT2G31310.1 | Thale cress | nucleus | 36.48 | 47.34 |
| Os08t0563400-00 | Rice | mitochondrion | 40.16 | 45.58 |
| EES14059 | Sorghum | mitochondrion | 39.34 | 44.65 |
| Zm00001d031882_P001 | Maize | plastid | 38.93 | 44.19 |
| AT5G06080.1 | Thale cress | mitochondrion, nucleus | 29.92 | 41.24 |
| AT3G26620.1 | Thale cress | mitochondrion | 19.26 | 38.84 |
| AT3G26660.1 | Thale cress | mitochondrion | 19.26 | 38.84 |
| AT2G45410.1 | Thale cress | cytosol, nucleus, plastid | 29.92 | 38.22 |
| AT4G00220.1 | Thale cress | plastid | 34.02 | 36.4 |
| AT4G00210.1 | Thale cress | nucleus | 31.56 | 35.0 |
| AT2G42430.1 | Thale cress | plastid | 33.61 | 33.47 |
| AT3G11090.1 | Thale cress | mitochondrion | 22.13 | 32.73 |
| AT2G45420.1 | Thale cress | plastid | 32.79 | 30.53 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 29.92 | 26.74 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:818844 | ProteinID:AAD23726.1 | EMBL:AB473848 | ProteinID:AEC10120.1 | ArrayExpress:AT2G42440 |
| EnsemblPlantsGene:AT2G42440 | RefSeq:AT2G42440 | TAIR:AT2G42440 | RefSeq:AT2G42440-TAIR-G | EnsemblPlants:AT2G42440.1 | TAIR:AT2G42440.1 |
| EMBL:AY074651 | Unigene:At.37013 | ncoils:Coil | GO:GO:0008150 | InterPro:IPR004883 | InterPro:LOB |
| RefSeq:NP_850370.4 | PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF12 | UniProt:Q9SLB6 |
| UniParc:UPI000009E0C3 | SEG:seg | : | : | : | : |
Description
LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
Coordinates
chr2:-:17668701..17669836
Molecular Weight (calculated)
27388.8 Da
IEP (calculated)
6.434
GRAVY (calculated)
-0.599
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.