CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016876.1-P	Field mustard	nucleus	98.86	98.86
CDY14832	Canola	mitochondrion, nucleus	72.73	96.48
CDY35378	Canola	cytosol, nucleus, plastid	26.52	67.96
AT2G42440.1	Thale cress	mitochondrion, nucleus	58.33	63.11
CDY00547	Canola	mitochondrion, nucleus	50.38	61.29
CDX88974	Canola	mitochondrion, nucleus	50.38	60.73
CDX71962	Canola	plastid	50.38	60.18
CDY06048	Canola	plastid	51.14	60.0
CDY24760	Canola	nucleus	32.2	47.22
CDY15375	Canola	nucleus	32.2	47.22
CDY10793	Canola	nucleus	32.2	47.22
Os08t0563400-00	Rice	mitochondrion	36.74	45.12
EES14059	Sorghum	mitochondrion	36.36	44.65
Zm00001d031882_P001	Maize	plastid	35.61	43.72
CDX75748	Canola	cytosol, mitochondrion, nucleus	18.18	40.0
CDY57108	Canola	mitochondrion	26.89	39.89
CDY37038	Canola	mitochondrion	26.89	39.89
CDY28537	Canola	mitochondrion	17.8	38.84
CDX82498	Canola	cytosol, nucleus, plastid	17.8	38.84
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	17.05	38.46
CDX74738	Canola	cytosol, nucleus, plastid	27.27	38.3
CDY68561	Canola	cytosol, nucleus, plastid	27.27	38.3
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	17.42	38.02
CDY48982	Canola	mitochondrion	17.42	38.02
CDX98901	Canola	nucleus	26.14	37.7
CDY19098	Canola	cytosol	34.09	37.66
CDY60434	Canola	nucleus	25.76	37.16
CDY07237	Canola	nucleus	26.14	35.75
CDY69735	Canola	cytosol, nucleus, plastid	28.03	33.04
CDY54923	Canola	cytosol, nucleus, plastid	28.03	33.04
CDY67746	Canola	nucleus	27.65	32.88
CDY64515	Canola	nucleus, plastid	30.3	32.79
CDY22562	Canola	nucleus	29.55	32.77
CDY07236	Canola	plastid	27.65	32.59
CDY47969	Canola	nucleus	29.92	32.11
CDY14831	Canola	nucleus	29.55	31.71
CDY70198	Canola	nucleus	28.79	31.15
CDY00994	Canola	plastid	19.7	30.41
CDY18932	Canola	plastid	28.79	30.28
CDY08551	Canola	plastid	19.7	30.23
CDY68635	Canola	nucleus	29.17	29.73
CDY57109	Canola	plastid	29.17	29.62
CDX92049	Canola	plastid	28.03	27.72
CDY29956	Canola	plastid	28.41	27.27
CDX74209	Canola	plastid	28.03	27.11

Protein Annotations

EnsemblPlants:CDY47970	EnsemblPlantsGene:GSBRNA2T00088595001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR004883	InterPro:IPR036397	InterPro:LOB	InterPro:RNaseH_sf	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF2	PFAM:PF03195	PFAM:PF13456	PFscan:PS50891	ProteinID:CDY47970	ProteinID:CDY47970.1
SEG:seg	UniParc:UPI0004EE5C35	UniProt:A0A078IAR0	MapMan:15.5.24	:	:

Description

BnaA04g24480DBnaA04g24480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAR0]

Coordinates

chrLK032747:-:40238..41671

Molecular Weight (calculated)

29382.6 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.347

Length

264 amino acids

Sequence
(BLAST)

001: MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSQLPMQD RCEAAITIYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ
101: LEILKQQATQ SMMTTDTPSL ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSLDTESDSD LKNIMTSYSE LDQHLNTFNQ YHNGGNDVLS ASFGKNSSSN
201: GVATLIRAIN NDAQVKEIFG IVKDIQELSS VFVEISFAHV PRSSNVEADR LAKLALSVSV VSNP

Best Arabidopsis Sequence Match ( AT2G42440.1 )
(BLAST)

001: MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ
101: LEILKQQATQ SMMAIDSPSI ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG GDTMAGSYYY NSSSGCSEEL
201: KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY ITYS

Arabidopsis Description

LBD17LOB domain-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.