Factsheet for Zm00001d031882_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14059	Sorghum	mitochondrion	91.16	91.16
Os08t0563400-00	Rice	mitochondrion	71.16	71.16
AT3G58190.1	Thale cress	plastid	50.23	49.54
CDY14832	Canola	mitochondrion, nucleus	43.72	47.24
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	35.81	46.11
CDX71962	Canola	plastid	46.98	45.7
CDY00547	Canola	mitochondrion, nucleus	45.58	45.16
CDY06048	Canola	plastid	46.98	44.89
CDX88974	Canola	mitochondrion, nucleus	45.58	44.75
Bra014581.1-P	Field mustard	mitochondrion, nucleus	45.12	44.29
Bra007385.1-P	Field mustard	plastid	45.58	43.56
Zm00001d027679_P001	Maize	cytosol, nucleus	48.84	43.03
Zm00001d048401_P001	Maize	nucleus	45.58	41.88
Zm00001d051891_P001	Maize	plastid	41.4	41.2
AT2G42440.1	Thale cress	mitochondrion, nucleus	44.19	38.93
Bra016876.1-P	Field mustard	nucleus	43.72	35.61
CDY47970	Canola	nucleus	43.72	35.61
Zm00001d028413_P001	Maize	plastid	40.93	33.85
Zm00001d030364_P001	Maize	plastid	38.14	33.47
Zm00001d047921_P001	Maize	plastid	40.47	32.83
Zm00001d034384_P001	Maize	plastid	23.26	30.49
Zm00001d043311_P001	Maize	plastid	29.3	28.51
Zm00001d031544_P001	Maize	plastid	24.65	25.73
Zm00001d018832_P001	Maize	nucleus	24.19	8.47
Zm00001d007919_P001	Maize	mitochondrion	25.58	8.05

Protein Annotations

EnsemblPlants:Zm00001d031882_P001	EnsemblPlants:Zm00001d031882_T001	EnsemblPlantsGene:Zm00001d031882	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:ONM03876.1	UniParc:UPI0003C6F538
UniProt:A0A1D6KM00	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 29

Coordinates

chr1:+:205250102..205251502

Molecular Weight (calculated)

23765.9 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.305

Length

215 amino acids

Sequence
(BLAST)

001: MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EHGAAHFAAI HKVFGASNAS KLLMHLPISD RCEAAVTMSY EAQARLQDPI YGCVAHIFSL QQQVVRLQAE
101: LESFKALAIQ GCGDGSLTSN PQKENCERLA PYIQDGQLFY QPTMANNSSV KSERQLYFAN DCFTSTSTQH SEGYEPDICM PDYYNNSNPS WTTQGSGYHD
201: IDELQSVAFA YLDNA

Best Arabidopsis Sequence Match ( AT3G58190.1 )
(BLAST)

001: MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN
101: LQAELEILKQ QAAQSMIFAD SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS SGMGEFSIYS DLEQHLNTFN
201: QDHLKELQSA NFGYISFS

Arabidopsis Description

LBD29LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.