Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034384_P001 | Maize | plastid | 8.47 | 31.71 |
| OQU88465 | Sorghum | nucleus | 48.05 | 31.52 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 8.31 | 30.54 |
| Zm00001d007919_P001 | Maize | mitochondrion | 32.41 | 29.14 |
| Zm00001d051891_P001 | Maize | plastid | 9.77 | 27.78 |
| Zm00001d028413_P001 | Maize | plastid | 10.91 | 25.77 |
| Zm00001d043311_P001 | Maize | plastid | 9.12 | 25.34 |
| Zm00001d047921_P001 | Maize | plastid | 10.91 | 25.28 |
| Zm00001d027679_P001 | Maize | cytosol, nucleus | 9.77 | 24.59 |
| Zm00001d030364_P001 | Maize | plastid | 9.77 | 24.49 |
| Zm00001d031882_P001 | Maize | plastid | 8.47 | 24.19 |
| Zm00001d048401_P001 | Maize | nucleus | 9.12 | 23.93 |
| Zm00001d031544_P001 | Maize | plastid | 7.65 | 22.82 |
Protein Annotations
| EnsemblPlants:Zm00001d018832_P001 | EnsemblPlants:Zm00001d018832_T001 | EnsemblPlantsGene:Zm00001d018832 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONM51429.1 | SEG:seg |
| UniParc:UPI00022103D0 | UniProt:A0A1D6HSN9 | MapMan:15.5.24 | : | : | : |
Description
LBD-transcription factor 34
Coordinates
chr7:-:6806891..6808735
Molecular Weight (calculated)
66511.0 Da
IEP (calculated)
5.691
GRAVY (calculated)
-0.653
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNQGTGRR AQCEVCKKLR RSCPLNCIFA PNFSAEEFAA VNRVYGSGNV ANMIRCVTPS EQRRVAAATL VAEARARERD PVFGCVSYIR ILQEFNYNAR
101: KQVDEAREEI AREFGAAAAA EPVDLAAAGP AVRLEARAQV DAALKDAREL DARMLDVRKG NDVILWRELQ QQQAAVKGKG KGKRAMKGKE VDVKRRRHEP
201: SLSEQTMQVV PQAAKPRNPG PPGFPDDHSR QQVAVAVAEA ERTAPPDAPE GHGHGRQLHH QMSEPEAQQQ ASAADASAGQ HTGTGHPHHA GDAAAPDIPA
301: GPGHDSSTSV IRAMQEVQHA GATGEQDQHH VAQHAQNEHC VALGHGDPYG ISQDILQLQL LLMGQCGAAP ATEQDVTAMM QQMAAAASGW QQQDHPAPQP
401: QYAEMRDNTL GHGHGHPDGL SSEEILQPQE LSMEQCDAAV EGTAPAEQDV MAMMQQMAAA ASGWQQQDHL APQPQYVEMR DNTLGHGHGH PDGLSSEKIL
501: QLQELLMGQC DAAEEGAAPT EQEVMVMMQQ MAAAAWPQQD PAPQYAETDI TIGHGHPDMQ KLLDTTELAR NQLMTNNYVT TMVQQNSSSV LAPSSPRGRT
601: SPRPGLLPPR DWPW
101: KQVDEAREEI AREFGAAAAA EPVDLAAAGP AVRLEARAQV DAALKDAREL DARMLDVRKG NDVILWRELQ QQQAAVKGKG KGKRAMKGKE VDVKRRRHEP
201: SLSEQTMQVV PQAAKPRNPG PPGFPDDHSR QQVAVAVAEA ERTAPPDAPE GHGHGRQLHH QMSEPEAQQQ ASAADASAGQ HTGTGHPHHA GDAAAPDIPA
301: GPGHDSSTSV IRAMQEVQHA GATGEQDQHH VAQHAQNEHC VALGHGDPYG ISQDILQLQL LLMGQCGAAP ATEQDVTAMM QQMAAAASGW QQQDHPAPQP
401: QYAEMRDNTL GHGHGHPDGL SSEEILQPQE LSMEQCDAAV EGTAPAEQDV MAMMQQMAAA ASGWQQQDHL APQPQYVEMR DNTLGHGHGH PDGLSSEKIL
501: QLQELLMGQC DAAEEGAAPT EQEVMVMMQQ MAAAAWPQQD PAPQYAETDI TIGHGHPDMQ KLLDTTELAR NQLMTNNYVT TMVQQNSSSV LAPSSPRGRT
601: SPRPGLLPPR DWPW
001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F
Arabidopsis Description
LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.