Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007919_P001 | Maize | mitochondrion | 48.82 | 66.91 |
| Zm00001d018832_P001 | Maize | nucleus | 31.52 | 48.05 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 6.41 | 35.71 |
| EES07771 | Sorghum | plastid | 7.16 | 31.16 |
| EER93325 | Sorghum | plastid | 5.77 | 30.0 |
| EES14059 | Sorghum | mitochondrion | 6.73 | 29.3 |
| EES01535 | Sorghum | plastid | 6.94 | 29.15 |
| KXG38649 | Sorghum | plastid | 8.01 | 28.85 |
| EER92849 | Sorghum | mitochondrion | 7.26 | 27.76 |
| EER92557 | Sorghum | nucleus | 8.01 | 27.17 |
| OQU80868 | Sorghum | peroxisome | 5.66 | 26.37 |
Protein Annotations
| EnsemblPlants:OQU88465 | EnsemblPlantsGene:SORBI_3002G039900 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:OQU88465 | ProteinID:OQU88465.1 | SEG:seg |
| UniParc:UPI0009DC854B | UniProt:A0A1W0W288 | MapMan:15.5.24 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:3877146..3881102
Molecular Weight (calculated)
101960.0 Da
IEP (calculated)
5.855
GRAVY (calculated)
-0.602
Length
936 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDDEQAVAV AVAAPCGACR TLRRRCVPGC VFAPYFTAED FAAVHGVFGA SNVSKMLERI ELPEQRAVAA ATLVEEARAR QLDPTFGRVS YLRILQEVND
101: KARTQVDEAR EEIAREFGAL AASQPVDVAA AAPAARVEAR AQVDAALKHA REQDARLIGV RMANEARWRE LHEPATGTVT GKHAGNGKGI DVVKRHREPT
201: LSEQTMLMLR AAKQRISRTT GFPDEGERQQ MAVVDAEREK ALFMRQAAPA KQHDYHHHHL GAQHGDTEPP RIPEVYGNGQ LTASADASRE EAMRSVQAPA
301: AAPPQQLDSA GQHAGTGQPR HAGDAAAGRT PGQGSTSVLL EAMMQLAGAT GEQQHLVAQH AENEHAVALG HGHPVDISQE MMQLQELLDM AELARNEQMM
401: KNDVMTEMGQ WDAAAGVARE PDVMTMTQQM PANAWQHRDP APQYAGMCDG RPLEMPQQME EASTAELAKT TTGNMSQQFA WAQQHHDPAA AQHASPCHHQ
501: MAAASASQVA SEQDMLLLLQ QHQVGAAELP STGGARQFDN LAAQYGDTEL TLGYGHPDMH QQVVAAGQVA RVQDMNSPQL AARAHQHHAQ NGLDIALGNG
601: HPGDAETQAM LQELAAILEL ADERAMIRKQ WEQDARTMMT QQDPDAAWLQ EMLGQKQIEK ASRPDGPDLD KRLEIMSRQA EARHAQKELG ITPDGSAQGI
701: LQAQELSAMA EMQRKREMVM RQFVAAERAR EQKLEMLMRQ FVAAARAREQ ELITQQAAAA QQQPVAQQYS ETELDVSLGQ GHGHPYWHQP TVQEMVQKKQ
801: LPTVQQMLEE EQLAEAVGFG RHQPDTTLVQ QVPAYANGEH GGGAGATMAF LSPGYAKAAP FRVDQQLQTN GHQMDSSLPP MPPSLSQLHA QASHQQRTDG
901: GGQGLSSDLA AYLHYESLSR HGTAGFNRGS EGPERR
101: KARTQVDEAR EEIAREFGAL AASQPVDVAA AAPAARVEAR AQVDAALKHA REQDARLIGV RMANEARWRE LHEPATGTVT GKHAGNGKGI DVVKRHREPT
201: LSEQTMLMLR AAKQRISRTT GFPDEGERQQ MAVVDAEREK ALFMRQAAPA KQHDYHHHHL GAQHGDTEPP RIPEVYGNGQ LTASADASRE EAMRSVQAPA
301: AAPPQQLDSA GQHAGTGQPR HAGDAAAGRT PGQGSTSVLL EAMMQLAGAT GEQQHLVAQH AENEHAVALG HGHPVDISQE MMQLQELLDM AELARNEQMM
401: KNDVMTEMGQ WDAAAGVARE PDVMTMTQQM PANAWQHRDP APQYAGMCDG RPLEMPQQME EASTAELAKT TTGNMSQQFA WAQQHHDPAA AQHASPCHHQ
501: MAAASASQVA SEQDMLLLLQ QHQVGAAELP STGGARQFDN LAAQYGDTEL TLGYGHPDMH QQVVAAGQVA RVQDMNSPQL AARAHQHHAQ NGLDIALGNG
601: HPGDAETQAM LQELAAILEL ADERAMIRKQ WEQDARTMMT QQDPDAAWLQ EMLGQKQIEK ASRPDGPDLD KRLEIMSRQA EARHAQKELG ITPDGSAQGI
701: LQAQELSAMA EMQRKREMVM RQFVAAERAR EQKLEMLMRQ FVAAARAREQ ELITQQAAAA QQQPVAQQYS ETELDVSLGQ GHGHPYWHQP TVQEMVQKKQ
801: LPTVQQMLEE EQLAEAVGFG RHQPDTTLVQ QVPAYANGEH GGGAGATMAF LSPGYAKAAP FRVDQQLQTN GHQMDSSLPP MPPSLSQLHA QASHQQRTDG
901: GGQGLSSDLA AYLHYESLSR HGTAGFNRGS EGPERR
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.