Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031544_P001 | Maize | plastid | 82.09 | 80.1 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 47.76 | 55.49 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 46.27 | 55.36 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 48.76 | 54.75 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 47.26 | 53.67 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 48.76 | 52.13 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 48.26 | 51.32 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 47.76 | 50.53 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 20.9 | 48.28 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.86 | 47.86 |
| AT3G26660.1 | Thale cress | mitochondrion | 27.86 | 46.28 |
| AT3G26620.1 | Thale cress | mitochondrion | 27.86 | 46.28 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.86 | 46.28 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 27.36 | 45.83 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 27.36 | 45.45 |
| GSMUA_Achr11P... | Banana | mitochondrion | 34.33 | 43.95 |
| EER93325 | Sorghum | plastid | 39.3 | 43.89 |
| CDY28537 | Canola | mitochondrion | 25.87 | 42.98 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 25.87 | 42.98 |
| CDY48982 | Canola | mitochondrion | 25.37 | 42.15 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 19.9 | 42.11 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 43.28 | 41.23 |
| KRH14351 | Soybean | mitochondrion | 27.36 | 38.46 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 28.36 | 37.25 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 26.37 | 37.06 |
| Bra025217.1-P | Field mustard | cytosol | 18.41 | 34.58 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 24.38 | 33.11 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 25.37 | 30.36 |
| EES07771 | Sorghum | plastid | 28.86 | 26.98 |
| EES01535 | Sorghum | plastid | 27.36 | 24.66 |
| EES14059 | Sorghum | mitochondrion | 25.37 | 23.72 |
| EER92849 | Sorghum | mitochondrion | 26.87 | 22.04 |
| EER92557 | Sorghum | nucleus | 28.86 | 21.01 |
| KXG38649 | Sorghum | plastid | 25.37 | 19.62 |
| Bra032938.1-P | Field mustard | nucleus | 23.88 | 16.33 |
| OQU88465 | Sorghum | nucleus | 26.37 | 5.66 |
Protein Annotations
| EnsemblPlants:OQU80868 | EnsemblPlantsGene:SORBI_3007G200400 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF56 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:OQU80868 | ProteinID:OQU80868.1 | SEG:seg |
| UniParc:UPI000B423983 | UniProt:A0A1Z5RAU0 | MapMan:15.5.24 | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:63134330..63135866
Molecular Weight (calculated)
21607.2 Da
IEP (calculated)
5.255
GRAVY (calculated)
-0.534
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGAGGGGG MEMDHQHPDS AGSATAVARR CAACKYLRRR CAPDCVLAPY FPASQPRRYA DVHAVFGTSN LTRVLQSLPV QERGRAADTM ATEAHWRVQD
101: PVYGCTGIIH GLQQEIRDVQ QQLATTRAQL AMHLHGSGTA PPSSSPQPPL AAAAAATVTV NSGGRHRVSV HEDDEEQQQE EEEEEAPLMD PDEFLDLDGR
201: L
101: PVYGCTGIIH GLQQEIRDVQ QQLATTRAQL AMHLHGSGTA PPSSSPQPPL AAAAAATVTV NSGGRHRVSV HEDDEEQQQE EEEEEAPLMD PDEFLDLDGR
201: L
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.