Factsheet for Solyc06g064540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109240.1.1	Tomato	mitochondrion	59.46	72.73
AT3G26660.1	Thale cress	mitochondrion	45.27	55.37
AT3G26620.1	Thale cress	mitochondrion	44.59	54.55
CDX83633	Canola	cytosol, mitochondrion, nucleus, plastid	42.57	53.85
CDX82498	Canola	cytosol, nucleus, plastid	43.92	53.72
CDY28537	Canola	mitochondrion	43.92	53.72
CDY48982	Canola	mitochondrion	43.92	53.72
CDY13647	Canola	cytosol, mitochondrion, nucleus, plastid	43.24	52.89
CDX75748	Canola	cytosol, mitochondrion, nucleus	41.89	51.67
KRH14351	Soybean	mitochondrion	46.62	48.25
KRH59547	Soybean	mitochondrion, nucleus, plastid	42.57	44.06
VIT_16s0100g00440.t01	Wine grape	mitochondrion	44.59	43.14
GSMUA_Achr11P...	Banana	mitochondrion	41.22	38.85
Bra025217.1-P	Field mustard	cytosol	27.03	37.38
HORVU5Hr1G075950.1	Barley	cytosol, nucleus	21.62	36.78
TraesCS4B01G346500.1	Wheat	cytosol, mitochondrion, nucleus	38.51	33.93
TraesCS5A01G515300.1	Wheat	cytosol	39.19	32.4
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	37.84	32.37
Zm00001d034384_P001	Maize	plastid	34.46	31.1
HORVU4Hr1G084750.2	Barley	cytosol, nucleus	37.16	31.07
EER93325	Sorghum	plastid	37.16	30.56
Os08t0517100-01	Rice	cytosol, nucleus, plastid	19.59	30.53
TraesCS5D01G291300.1	Wheat	nucleus	38.51	30.16
Solyc01g091400.2.1	Tomato	plastid	33.78	29.94
TraesCS5A01G284000.1	Wheat	nucleus	37.84	29.79
TraesCS5B01G282700.1	Wheat	nucleus	37.84	29.47
Solyc03g095940.1.1	Tomato	plastid	33.11	28.82
Solyc06g083930.1.1	Tomato	nucleus	33.78	25.51
Zm00001d031544_P001	Maize	plastid	34.46	24.76
OQU80868	Sorghum	peroxisome	33.11	24.38
TraesCS1D01G110300.1	Wheat	cytosol, mitochondrion, nucleus	34.46	24.17
Solyc09g066260.2.1	Tomato	nucleus	33.11	21.3
Bra032938.1-P	Field mustard	nucleus	41.22	20.75
Solyc09g066270.2.1	Tomato	nucleus	32.43	19.67
Solyc01g098220.1.1	Tomato	nucleus	31.76	19.5
Solyc01g091420.1.1	Tomato	plastid	32.43	17.71

Protein Annotations

EnsemblPlants:Solyc06g064540.1.1	EnsemblPlantsGene:Solyc06g064540.1	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF13	PFAM:PF03195	PFscan:PS50891	UniParc:UPI0002766EF6	UniProt:K4C784	MapMan:15.5.24

Description

No Description!

Coordinates

chr6:-:40212185..40213044

Molecular Weight (calculated)

16956.5 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.269

Length

148 amino acids

Sequence
(BLAST)

001: MVDLQNVLMN SRRCAACKQL RRRCPSDCIF LPYFPPNNPQ RFSFVHRIYG ASNVGKLLQQ VQEHQRADVA DSLYYEAYCR IKSPVYGCVG IITILHQEID
101: RLERELVKVQ AEISLVKGQT QIEGQLAQGQ QVQLSSSSFH LPTTTPWF

Best Arabidopsis Sequence Match ( AT3G26660.1 )
(BLAST)

001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M

Arabidopsis Description

LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.