Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48982 | Canola | mitochondrion | 39.12 | 95.04 |
| CDY28537 | Canola | mitochondrion | 38.1 | 92.56 |
| AT3G26660.1 | Thale cress | mitochondrion | 31.63 | 76.86 |
| AT3G26620.1 | Thale cress | mitochondrion | 31.29 | 76.03 |
| Bra025217.1-P | Field mustard | cytosol | 25.17 | 69.16 |
| Solyc01g109240.1.1 | Tomato | mitochondrion | 18.71 | 45.45 |
| KRH14351 | Soybean | mitochondrion | 21.43 | 44.06 |
| Solyc06g064540.1.1 | Tomato | mitochondrion, plastid | 20.75 | 41.22 |
| VIT_16s0100g00440.t01 | Wine grape | mitochondrion | 21.09 | 40.52 |
| KRH59547 | Soybean | mitochondrion, nucleus, plastid | 19.39 | 39.86 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.41 | 38.22 |
| TraesCS4B01G346500.1 | Wheat | cytosol, mitochondrion, nucleus | 19.05 | 33.33 |
| TraesCS4D01G341500.1 | Wheat | cytosol, mitochondrion, nucleus | 19.39 | 32.95 |
| TraesCS5A01G515300.1 | Wheat | cytosol | 19.73 | 32.4 |
| Zm00001d034384_P001 | Maize | plastid | 17.69 | 31.71 |
| HORVU4Hr1G084750.2 | Barley | cytosol, nucleus | 19.05 | 31.64 |
| Os08t0517100-01 | Rice | cytosol, nucleus, plastid | 9.52 | 29.47 |
| EER93325 | Sorghum | plastid | 18.03 | 29.44 |
| HORVU5Hr1G075950.1 | Barley | cytosol, nucleus | 8.5 | 28.74 |
| TraesCS5A01G284000.1 | Wheat | nucleus | 18.37 | 28.72 |
| TraesCS5D01G291300.1 | Wheat | nucleus | 18.37 | 28.57 |
| TraesCS5B01G282700.1 | Wheat | nucleus | 18.03 | 27.89 |
| Bra040312.1-P | Field mustard | cytosol, nucleus, plastid | 15.65 | 27.38 |
| Bra004908.1-P | Field mustard | cytosol, nucleus, plastid | 16.33 | 25.53 |
| TraesCS1D01G110300.1 | Wheat | cytosol, mitochondrion, nucleus | 17.69 | 24.64 |
| Bra034867.1-P | Field mustard | plastid | 14.29 | 24.42 |
| Bra001087.1-P | Field mustard | plastid | 9.86 | 24.17 |
| OQU80868 | Sorghum | peroxisome | 16.33 | 23.88 |
| Zm00001d031544_P001 | Maize | plastid | 16.67 | 23.79 |
| Bra009161.1-P | Field mustard | nucleus | 14.29 | 22.95 |
| Bra037323.1-P | Field mustard | plastid | 15.65 | 20.54 |
| Bra037322.1-P | Field mustard | nucleus | 15.31 | 20.27 |
| Bra018260.1-P | Field mustard | nucleus | 13.27 | 20.21 |
| Bra008514.1-P | Field mustard | cytosol, nucleus, plastid | 15.31 | 20.09 |
| Bra000257.1-P | Field mustard | nucleus | 15.65 | 19.33 |
| Bra004693.1-P | Field mustard | plastid | 15.31 | 18.44 |
| Bra016877.1-P | Field mustard | nucleus | 15.31 | 18.29 |
| Bra014581.1-P | Field mustard | mitochondrion, nucleus | 13.61 | 18.26 |
| Bra007385.1-P | Field mustard | plastid | 13.95 | 18.22 |
| Bra021737.1-P | Field mustard | cytosol | 13.95 | 17.15 |
| Bra016876.1-P | Field mustard | nucleus | 15.31 | 17.05 |
| Bra004910.1-P | Field mustard | plastid | 14.63 | 17.0 |
| Bra036436.1-P | Field mustard | plastid | 15.65 | 16.73 |
| Bra040311.1-P | Field mustard | nucleus | 14.63 | 16.6 |
Protein Annotations
Description
AT3G26660 (E=9e-050) LBD24 | LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)
Coordinates
chrA02:-:22395463..22401919
Molecular Weight (calculated)
32147.0 Da
IEP (calculated)
4.494
GRAVY (calculated)
-0.296
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETSAAIV LKKDEEVVTD TDWIITPLDE RGSNEAPVSS SETEQSAPVG PLETERPPVE APSSLLPAVP AVPTVVSPVP DTVIVSDGSS SPPEPVSSQT
101: DSVPIPEPPV IETLGRGQRE KTKSVTLRDY LLYNATAEPE TSTYTTQIYS GRGETNDVSL ISSSTLAPTI SSMFLFLVSK DTRYLRRRCP KDCVFSPFFP
201: PNNPEKFACV HRIYGAGNVS KMLQQLPVQT RAEAVESLCF EATCRIEDPV YGCVGMISLL QTQIQKTERL LARTQAEITV SQIKHSQNQH SEFM
101: DSVPIPEPPV IETLGRGQRE KTKSVTLRDY LLYNATAEPE TSTYTTQIYS GRGETNDVSL ISSSTLAPTI SSMFLFLVSK DTRYLRRRCP KDCVFSPFFP
201: PNNPEKFACV HRIYGAGNVS KMLQQLPVQT RAEAVESLCF EATCRIEDPV YGCVGMISLL QTQIQKTERL LARTQAEITV SQIKHSQNQH SEFM
001: MNPKRCAACK YLRRRCPKDC VFSPYFPPND PQKFACVHRI YGAGNVSKML QQLPDQTRAE AVESLCFEAK CRVDDPVYGC VGIIHLLKTQ IQKTQNELAK
101: TQAEIAVAQT KLSQTQNSDF M
101: TQAEIAVAQT KLSQTQNSDF M
Arabidopsis Description
LBD24LOB domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:P59468]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.