Factsheet for Bra001087.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74209	Canola	plastid	99.17	43.59
CDX92049	Canola	plastid	93.33	41.95
Bra036436.1-P	Field mustard	plastid	90.0	39.27
AT3G03760.1	Thale cress	nucleus, plastid	87.5	38.46
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	68.33	34.45
Bra040312.1-P	Field mustard	cytosol, nucleus, plastid	40.0	28.57
KRH32932	Soybean	cytosol, mitochondrion, nucleus	55.83	28.03
Solyc01g098220.1.1	Tomato	nucleus	55.83	27.8
PGSC0003DMT400057829	Potato	nucleus	55.83	27.8
KRH71749	Soybean	cytosol, mitochondrion, nucleus	55.0	27.73
KRG94981	Soybean	nucleus	55.0	27.62
Bra008514.1-P	Field mustard	cytosol, nucleus, plastid	50.83	27.23
Bra004908.1-P	Field mustard	cytosol, nucleus, plastid	41.67	26.6
Bra037323.1-P	Field mustard	plastid	48.33	25.89
Bra004693.1-P	Field mustard	plastid	50.83	25.0
Bra018260.1-P	Field mustard	nucleus	40.0	24.87
Bra000257.1-P	Field mustard	nucleus	49.17	24.79
Bra004910.1-P	Field mustard	plastid	51.67	24.51
Bra016877.1-P	Field mustard	nucleus	50.0	24.39
Bra009161.1-P	Field mustard	nucleus	36.67	24.04
Bra040311.1-P	Field mustard	nucleus	50.83	23.55
Bra037322.1-P	Field mustard	nucleus	43.33	23.42
Bra014581.1-P	Field mustard	mitochondrion, nucleus	41.67	22.83
Bra034867.1-P	Field mustard	plastid	32.5	22.67
Bra021737.1-P	Field mustard	cytosol	41.67	20.92
Bra007385.1-P	Field mustard	plastid	39.17	20.89
Bra025217.1-P	Field mustard	cytosol	18.33	20.56
Bra016876.1-P	Field mustard	nucleus	40.83	18.56
Bra032938.1-P	Field mustard	nucleus	24.17	9.86

Protein Annotations

EnsemblPlants:Bra001087.1	EnsemblPlants:Bra001087.1-P	EnsemblPlantsGene:Bra001087	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002540943	UniProt:M4CA58
MapMan:15.5.24	:	:	:	:	:

Description

AT3G03760 (E=9e-038) LBD20 | LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)

Coordinates

chrA03:+:14672898..14673260

Molecular Weight (calculated)

12555.8 Da

IEP (calculated)

11.279

GRAVY (calculated)

-0.309

Length

120 amino acids

Sequence
(BLAST)

001: MADQQRSHST SDSRRKSSAA GKRTLQRITT SSFSSGGAMA ATATTGTGTA SPCGACKFLR RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH
101: IPVNRRHDAV VTISYEAQAS

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.