CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32932	Soybean	cytosol, mitochondrion, nucleus	92.02	91.63
KRG94981	Soybean	nucleus	80.67	80.33
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	62.6	62.6
Bra001087.1-P	Field mustard	plastid	27.73	55.0
KRH19529	Soybean	plastid	26.89	52.89
Solyc01g098220.1.1	Tomato	nucleus	52.94	52.28
PGSC0003DMT400057829	Potato	nucleus	52.94	52.28
CDX92049	Canola	plastid	52.1	46.44
AT3G03760.1	Thale cress	nucleus, plastid	52.94	46.15
Bra036436.1-P	Field mustard	plastid	52.94	45.82
CDY29956	Canola	plastid	52.52	45.45
CDX74209	Canola	plastid	52.1	45.42
KRH32155	Soybean	plastid	37.4	41.78
KRH67347	Soybean	plastid	36.55	40.85
KRH76281	Soybean	cytosol, nucleus, plastid	33.61	40.4
KRG95645	Soybean	mitochondrion, nucleus	35.29	40.38
KRG95644	Soybean	nucleus	35.71	39.91
KRH67348	Soybean	nucleus	35.29	39.62
KRH32157	Soybean	mitochondrion, nucleus	37.82	37.66
KRH73761	Soybean	cytosol, nucleus, plastid	11.34	37.5
KRH19530	Soybean	mitochondrion, nucleus	36.97	37.13
KRH65255	Soybean	cytosol, nucleus, plastid	32.77	36.79
KRH40590	Soybean	plastid	34.45	35.34
KRH00577	Soybean	plastid	34.45	35.04
KRH76282	Soybean	plastid	35.71	34.41
KRH65254	Soybean	plastid	36.13	34.26
KRG97704	Soybean	mitochondrion	25.63	34.08
KRH73279	Soybean	mitochondrion	26.05	32.98
KRH14922	Soybean	mitochondrion	25.21	32.97
KRH31169	Soybean	mitochondrion	25.63	32.28
KRH73061	Soybean	mitochondrion, nucleus	29.83	32.27
KRH59547	Soybean	mitochondrion, nucleus, plastid	19.33	32.17
KRH14351	Soybean	mitochondrion	19.33	32.17
KRH15078	Soybean	plastid	28.99	29.87

Protein Annotations

EMBL:ACUP02001066	EnsemblPlants:KRH71749	EnsemblPlantsGene:GLYMA_02G166400	EntrezGene:100808548	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH71749
ProteinID:KRH71749.1	SEG:seg	UniParc:UPI00023BC3F6	UniProt:I1JFY2	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr2:+:25176214..25179057

Molecular Weight (calculated)

25670.0 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.462

Length

238 amino acids

Sequence
(BLAST)

001: MAESQGGSGG DDGASGSRRR GSTSRRAMAA QTQDEAMVES SPTTPCGACK FLRRRCVEGC IFAPHFGTDQ GAAKFAAVHK VFGASNVSKL LSNIPVNRRN
101: EASTTISYEA QARLSDPVYG CVSTILALQQ QVATLQAELA MLQTQLMNSR FAYASALQTT QLQQPNMNTG ALQPAYSNNS CASTNLLNLS TFNNNPSFVL
201: EMDTAPSSSL EPLQLTRLSQ CKEEDEEENK TQKAFNHR

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.