Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001087.1-P | Field mustard | plastid | 41.95 | 93.33 |
| CDX74209 | Canola | plastid | 91.76 | 89.74 |
| CDY29956 | Canola | plastid | 88.02 | 85.45 |
| AT3G03760.1 | Thale cress | nucleus, plastid | 85.39 | 83.52 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 28.09 | 72.82 |
| VIT_08s0056g01650.t01 | Wine grape | cytosol, nucleus, plastid | 56.93 | 63.87 |
| PGSC0003DMT400057829 | Potato | nucleus | 49.06 | 54.36 |
| KRH32932 | Soybean | cytosol, mitochondrion, nucleus | 47.94 | 53.56 |
| Solyc01g098220.1.1 | Tomato | nucleus | 47.94 | 53.11 |
| KRH71749 | Soybean | cytosol, mitochondrion, nucleus | 46.44 | 52.1 |
| KRG94981 | Soybean | nucleus | 44.57 | 49.79 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 34.46 | 41.07 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 18.35 | 40.83 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 34.08 | 40.62 |
| CDY15375 | Canola | nucleus | 27.34 | 40.56 |
| CDY07237 | Canola | nucleus | 29.21 | 40.41 |
| CDY24760 | Canola | nucleus | 26.97 | 40.0 |
| CDY10793 | Canola | nucleus | 26.59 | 39.44 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.23 | 39.32 |
| CDY07236 | Canola | plastid | 32.96 | 39.29 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.6 | 38.84 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 17.6 | 38.84 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 27.34 | 38.83 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 26.97 | 38.3 |
| CDY28537 | Canola | mitochondrion | 17.23 | 38.02 |
| CDY48982 | Canola | mitochondrion | 17.23 | 38.02 |
| CDX71962 | Canola | plastid | 31.46 | 38.01 |
| CDY14831 | Canola | nucleus | 34.83 | 37.8 |
| CDY47969 | Canola | nucleus | 34.46 | 37.4 |
| CDY14832 | Canola | mitochondrion, nucleus | 27.72 | 37.19 |
| CDY37038 | Canola | mitochondrion | 24.72 | 37.08 |
| CDY57108 | Canola | mitochondrion | 24.72 | 37.08 |
| CDY06048 | Canola | plastid | 31.09 | 36.89 |
| CDY64515 | Canola | nucleus, plastid | 33.71 | 36.89 |
| CDY00547 | Canola | mitochondrion, nucleus | 29.96 | 36.87 |
| CDY60434 | Canola | nucleus | 25.09 | 36.61 |
| CDY70198 | Canola | nucleus | 33.33 | 36.48 |
| CDX88974 | Canola | mitochondrion, nucleus | 29.59 | 36.07 |
| CDX98901 | Canola | nucleus | 24.72 | 36.07 |
| CDY67746 | Canola | nucleus | 29.96 | 36.04 |
| CDY22562 | Canola | nucleus | 31.84 | 35.71 |
| CDY18932 | Canola | plastid | 33.33 | 35.46 |
| CDY68635 | Canola | nucleus | 33.71 | 34.75 |
| CDY57109 | Canola | plastid | 32.96 | 33.85 |
| CDY19098 | Canola | cytosol | 28.09 | 31.38 |
| CDY00994 | Canola | plastid | 19.85 | 30.99 |
| CDY08551 | Canola | plastid | 19.85 | 30.81 |
| CDY47970 | Canola | nucleus | 27.72 | 28.03 |
Protein Annotations
| EnsemblPlants:CDX92049 | EnsemblPlantsGene:GSBRNA2T00153712001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31529 |
| PANTHER:PTHR31529:SF12 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX92049 | ProteinID:CDX92049.1 | SEG:seg |
| UniParc:UPI0004EEE50F | MapMan:15.5.24 | : | : | : | : |
Description
BnaC03g33510D
Coordinates
chrLK031870:+:1414868..1416291
Molecular Weight (calculated)
28722.7 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.341
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQLRSHNT SDSRRKSSAG KRTSLRTTTS SFSSGGAMAE TATTGTGTAS PCGACKFLRR KCASGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAA LQSELSLVQS QLVNSRVAMA NVMQQQQQQS HHHQQQQLVV MQQPEYSNNS SASTMNRFTA
201: TAAAAIGYDV MAPANLQHSL QPMPRHQQVT RNQHEDEEES GADFSVAVGS TAVAAEVIFP AEGFHRI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAA LQSELSLVQS QLVNSRVAMA NVMQQQQQQS HHHQQQQLVV MQQPEYSNNS SASTMNRFTA
201: TAAAAIGYDV MAPANLQHSL QPMPRHQQVT RNQHEDEEES GADFSVAVGS TAVAAEVIFP AEGFHRI
001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR
Arabidopsis Description
LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.