CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32932	Soybean	cytosol, mitochondrion, nucleus	80.75	80.75
KRH71749	Soybean	cytosol, mitochondrion, nucleus	80.33	80.67
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	60.67	60.92
KRH19529	Soybean	plastid	28.45	56.2
Bra001087.1-P	Field mustard	plastid	27.62	55.0
PGSC0003DMT400057829	Potato	nucleus	53.56	53.11
Solyc01g098220.1.1	Tomato	nucleus	53.14	52.7
AT3G03760.1	Thale cress	nucleus, plastid	51.05	44.69
CDX92049	Canola	plastid	49.79	44.57
CDX74209	Canola	plastid	50.21	43.96
Bra036436.1-P	Field mustard	plastid	49.79	43.27
CDY29956	Canola	plastid	49.37	42.91
KRH32155	Soybean	plastid	37.24	41.78
KRH73761	Soybean	cytosol, nucleus, plastid	12.55	41.67
KRG95645	Soybean	mitochondrion, nucleus	35.98	41.35
KRG95644	Soybean	nucleus	36.82	41.31
KRH67347	Soybean	plastid	36.82	41.31
KRH76281	Soybean	cytosol, nucleus, plastid	33.05	39.9
KRH67348	Soybean	nucleus	35.15	39.62
KRH32157	Soybean	mitochondrion, nucleus	38.91	38.91
KRH19530	Soybean	mitochondrion, nucleus	38.08	38.4
KRH40590	Soybean	plastid	35.98	37.07
KRH65255	Soybean	cytosol, nucleus, plastid	32.22	36.32
KRH76282	Soybean	plastid	37.24	36.03
KRH65254	Soybean	plastid	37.66	35.86
KRG97704	Soybean	mitochondrion	26.36	35.2
KRH14922	Soybean	mitochondrion	26.36	34.62
KRH00577	Soybean	plastid	33.89	34.62
KRH59547	Soybean	mitochondrion, nucleus, plastid	20.08	33.57
KRH14351	Soybean	mitochondrion	20.08	33.57
KRH73279	Soybean	mitochondrion	26.36	33.51
KRH73061	Soybean	mitochondrion, nucleus	30.54	33.18
KRH31169	Soybean	mitochondrion	25.94	32.8
KRH15078	Soybean	plastid	30.13	31.17

Protein Annotations

EMBL:ACUP02012068	EnsemblPlants:KRG94981	EnsemblPlantsGene:GLYMA_19G122500	EntrezGene:100804332	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:KRG94981
ProteinID:KRG94981.1	SEG:seg	UniParc:UPI000233EB6F	UniProt:K7MY04	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr19:-:38068631..38072068

Molecular Weight (calculated)

25774.2 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.353

Length

239 amino acids

Sequence
(BLAST)

001: MAEPQGGIGG DSGASGSKRR STVSKRGMVA QTQDEAIVGS SPATPCGACK FLRRKCIGGC IFAPYFCTDQ GAAKFAAVHK VFGASNVSKL LSNIPANRRH
101: EAATSISYEA QARLSDPVYG CVSTILALQQ QVVSLQAELA MLQTQLMNSK FFYTSALQTT QLHQPNMNAA ALHPAYSNNS CGSTNLLNLS NFNNTPSFDL
201: AMDTTPSSHS LEPLQLTRLS QYEEEEEEES KTQQTFDHH

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.