Factsheet for VIT_08s0056g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001087.1-P	Field mustard	plastid	34.45	68.33
KRH32932	Soybean	cytosol, mitochondrion, nucleus	63.45	63.18
PGSC0003DMT400057829	Potato	nucleus	63.87	63.07
KRH71749	Soybean	cytosol, mitochondrion, nucleus	62.6	62.6
Solyc01g098220.1.1	Tomato	nucleus	63.03	62.24
KRG94981	Soybean	nucleus	60.92	60.67
AT3G03760.1	Thale cress	nucleus, plastid	67.23	58.61
CDX92049	Canola	plastid	63.87	56.93
Bra036436.1-P	Field mustard	plastid	65.13	56.36
CDX74209	Canola	plastid	64.29	56.04
CDY29956	Canola	plastid	64.71	56.0
VIT_07s0005g03030.t01	Wine grape	plastid	37.82	46.15
VIT_07s0005g03020.t01	Wine grape	mitochondrion, nucleus	40.34	41.38
VIT_13s0019g03810.t01	Wine grape	plastid	23.95	41.01
VIT_15s0048g00840.t01	Wine grape	cytosol, nucleus, plastid	33.19	40.72
VIT_13s0019g02060.t01	Wine grape	mitochondrion, nucleus	34.03	36.99
VIT_15s0048g00830.t01	Wine grape	nucleus	38.66	36.65
VIT_16s0100g00440.t01	Wine grape	mitochondrion	23.53	36.6
VIT_13s0067g01450.t01	Wine grape	plastid	25.63	35.67
VIT_13s0019g03800.t01	Wine grape	plastid	19.75	31.97
VIT_13s0019g03830.t01	Wine grape	plastid	22.27	31.36
VIT_13s0019g03820.t01	Wine grape	nucleus, plastid	23.95	29.69
VIT_13s0019g03840.t01	Wine grape	nucleus, plastid	23.53	28.87

Protein Annotations

EntrezGene:100241627	wikigene:100241627	MapMan:15.5.24	ProteinID:CCB56026	ProteinID:CCB56026.1	ncoils:Coil
UniProt:F6HMP4	EMBL:FN595995	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009753	GO:GO:0009867	GO:GO:0009987
GO:GO:1900150	InterPro:IPR004883	InterPro:LOB	EntrezGene:LOC100241627	wikigene:LOC100241627	PFAM:PF03195
PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12	UniParc:UPI00015CD068	ArrayExpress:VIT_08s0056g01650	EnsemblPlantsGene:VIT_08s0056g01650
EnsemblPlants:VIT_08s0056g01650.t01	RefSeq:XP_002271115	RefSeq:XP_002271115.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:2648151..2649186

Molecular Weight (calculated)

25678.1 Da

IEP (calculated)

6.146

GRAVY (calculated)

-0.244

Length

238 amino acids

Sequence
(BLAST)

001: MADPQGDGTL ESRRKGVGKR PTGMVEDVVE AVAVTSLSPA APCGACKFLR RKCVSGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPVNRRHDAV
101: VTISYEAQAR LSDPVYGCVS TILALQQQVA SLQAELAMVQ AQLINSRFAV ANAFQNSQQQ QQHQIAVLQP AYSNNSTASN NLINVGSFTS NFDIASETAP
201: SSHSLEPLQL SQPSQDEDED EEESQNPVMF SNEILHRR

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.