Factsheet for PGSC0003DMT400057829

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098220.1.1	Tomato	nucleus	93.78	93.78
VIT_08s0056g01650.t01	Wine grape	cytosol, nucleus, plastid	63.07	63.87
Bra001087.1-P	Field mustard	plastid	27.8	55.83
PGSC0003DMT400033253	Potato	plastid	31.95	55.4
KRH32932	Soybean	cytosol, mitochondrion, nucleus	53.53	53.97
KRG94981	Soybean	nucleus	53.11	53.56
KRH71749	Soybean	cytosol, mitochondrion, nucleus	52.28	52.94
CDX92049	Canola	plastid	54.36	49.06
AT3G03760.1	Thale cress	nucleus, plastid	55.19	48.72
Bra036436.1-P	Field mustard	plastid	53.94	47.27
CDX74209	Canola	plastid	53.53	47.25
CDY29956	Canola	plastid	53.53	46.91
PGSC0003DMT400025135	Potato	nucleus	39.42	42.99
PGSC0003DMT400051680	Potato	nucleus	33.61	41.54
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	21.99	39.85
PGSC0003DMT400025142	Potato	nucleus	34.85	34.29
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	21.58	33.55
PGSC0003DMT400071281	Potato	plastid	22.41	30.51

Protein Annotations

EntrezGene:102584070	MapMan:15.5.24	ncoils:Coil	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009753	GO:GO:0009867
GO:GO:0009987	GO:GO:1900150	InterPro:IPR004883	InterPro:LOB	UniProt:M1C1R4	PFAM:PF03195
EnsemblPlantsGene:PGSC0003DMG400022454	PGSC:PGSC0003DMG400022454	EnsemblPlants:PGSC0003DMT400057829	PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF12
UniParc:UPI00029627DB	RefSeq:XP_006347838.1	SEG:seg	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022454]

Coordinates

chr1:-:75862621..75863834

Molecular Weight (calculated)

26383.7 Da

IEP (calculated)

6.619

GRAVY (calculated)

-0.393

Length

241 amino acids

Sequence
(BLAST)

001: MDEPSSDGDR HKGPGKRVSG AVEQQASGVL LASTAPCGAC KFLRRKCING CVFAPYFGSD QGAARFAAVH KVFGASNVSK LLLHIPANRR QDAVVTITYE
101: AQARLSDPVY GCVSTILALQ QQVASLQSEL AIVQTQIMNS RYAMANAYHN ISQQQEQHIA ILQPSYSNNS SISNNNINLV NNFNNSTTNI FDHHHQLHGS
201: VTCTANNSPS CDPIHQLHDE EEEEEESHNP LAFTNHMFHS L

Best Arabidopsis Sequence Match ( AT3G03760.1 )
(BLAST)

001: MADQQRGHNT SDSRRKSLAG KRTSQQTPTS SLSSGGVSMA AATTGTGTAS PCGACKFLRR KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI
101: PVNRRHDAVV TISYEAQARL SDPVYGCVST ILALQQQVAS LQAELSVVQS QLINSRVAMA NVMQQQTHHQ QQQQQLVVMQ QPEYSNNSSA STTLAGAAMN
201: SFTMTADAAA VSYDVMAPTN LEHSLQPMPP HQQRRGDYQH EDEEESGADF SVAVGSTAVA SKVIFPAEDF HRR

Arabidopsis Description

LBD20LOB domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.