Factsheet for PGSC0003DMT400051680

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083930.1.1	Tomato	nucleus	96.92	96.43
CDY35378	Canola	cytosol, nucleus, plastid	37.95	71.84
VIT_07s0005g03030.t01	Wine grape	plastid	57.95	57.95
PGSC0003DMT400025135	Potato	nucleus	65.13	57.47
KRG95644	Soybean	nucleus	60.51	55.4
KRH67347	Soybean	plastid	59.49	54.46
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	48.21	51.37
EER95498	Sorghum	cytosol, nucleus, plastid	44.1	51.19
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	43.08	50.3
PGSC0003DMT400033253	Potato	plastid	34.36	48.2
Os03t0149000-01	Rice	plastid	45.64	48.11
HORVU4Hr1G080150.1	Barley	plastid	43.08	45.65
TraesCS4A01G415300.1	Wheat	plastid	43.08	45.41
TraesCS4D01G312700.1	Wheat	plastid	42.56	44.38
TraesCS4B01G316100.1	Wheat	plastid	42.05	43.85
CDY64515	Canola	nucleus, plastid	52.31	41.8
AT2G42430.1	Thale cress	plastid	52.31	41.63
Bra004693.1-P	Field mustard	plastid	51.79	41.39
Bra000257.1-P	Field mustard	nucleus	50.26	41.18
CDY14831	Canola	nucleus	51.79	41.06
CDY70198	Canola	nucleus	51.28	40.98
CDY22562	Canola	nucleus	49.74	40.76
Bra016877.1-P	Field mustard	nucleus	51.28	40.65
CDY47969	Canola	nucleus	51.28	40.65
TraesCS6A01G398400.1	Wheat	plastid	42.05	39.81
TraesCS6D01G382600.1	Wheat	plastid	42.56	39.71
EES07771	Sorghum	plastid	43.59	39.53
Zm00001d051891_P001	Maize	plastid	43.08	38.89
Os02t0820500-01	Rice	plastid	43.08	38.89
HORVU0Hr1G017670.2	Barley	plastid	41.54	38.57
TraesCS6B01G438700.1	Wheat	plastid	41.03	37.91
PGSC0003DMT400033221	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	25.13	36.84
PGSC0003DMT400025142	Potato	nucleus	44.62	35.51
PGSC0003DMT400097267	Potato	cytosol, mitochondrion, plastid	28.21	35.48
PGSC0003DMT400071281	Potato	plastid	31.28	34.46
PGSC0003DMT400057829	Potato	nucleus	41.54	33.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400051680	EnsemblPlantsGene:PGSC0003DMG400020069	EntrezGene:102588262	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400020069	RefSeq:XP_006352833.1	SEG:seg
UniParc:UPI000296F995	UniProt:M1BS16	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020069]

Coordinates

chr6:-:58784168..58785839

Molecular Weight (calculated)

21496.3 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.341

Length

195 amino acids

Sequence
(BLAST)

001: MASTGSPCGA CKFLRRKCAV DCIFAPYFNS EEGPSKFAAI HKVFGASNVS KLLHNVPIDD RCDAVVTLSY EAQARIKDPV FGCVANIFAL QQQVAYLQSQ
101: LMQVKGQLAQ SLMNSNNCYN PQWINNNNMA SSSGQMTSSS FPANYPNYIN LKSNSSPQSS SMESVDHYSD GHGIMNMQDM QSLDHFLYQP YNTSS

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.