Factsheet for TraesCS6D01G382600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G398400.1	Wheat	plastid	94.26	95.63
HORVU0Hr1G017670.2	Barley	plastid	90.91	90.48
TraesCS6B01G438700.1	Wheat	plastid	90.91	90.05
Os02t0820500-01	Rice	plastid	76.08	73.61
EES07771	Sorghum	plastid	75.12	73.02
Zm00001d051891_P001	Maize	plastid	74.16	71.76
CDY35378	Canola	cytosol, nucleus, plastid	34.45	69.9
KRH19529	Soybean	plastid	32.06	55.37
VIT_07s0005g03030.t01	Wine grape	plastid	49.28	52.82
GSMUA_Achr1P01350_001	Banana	nucleus	45.93	47.76
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	44.02	47.67
TraesCS4D01G312700.1	Wheat	plastid	42.58	47.59
PGSC0003DMT400025135	Potato	nucleus	47.85	45.25
KRH32155	Soybean	plastid	44.5	43.66
Solyc06g083930.1.1	Tomato	nucleus	40.19	42.86
PGSC0003DMT400051680	Potato	nucleus	39.71	42.56
Bra004693.1-P	Field mustard	plastid	48.8	41.8
Bra000257.1-P	Field mustard	nucleus	46.89	41.18
CDY14831	Canola	nucleus	48.33	41.06
CDY64515	Canola	nucleus, plastid	47.85	40.98
CDY70198	Canola	nucleus	47.85	40.98
Solyc09g066260.2.1	Tomato	nucleus	44.98	40.87
CDY22562	Canola	nucleus	46.41	40.76
AT2G42430.1	Thale cress	plastid	47.37	40.41
CDY47969	Canola	nucleus	47.37	40.24
Bra016877.1-P	Field mustard	nucleus	46.89	39.84
TraesCS4D01G001700.1	Wheat	mitochondrion	39.23	37.79
TraesCS4D01G225200.1	Wheat	nucleus	42.58	34.23
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	26.79	32.37
TraesCS4D01G312800.1	Wheat	plastid	44.02	32.17
TraesCS5D01G291300.1	Wheat	nucleus	28.23	31.22
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	33.49	30.57
TraesCS3D01G308000.1	Wheat	mitochondrion	33.49	28.46
TraesCS1D01G110300.1	Wheat	cytosol, mitochondrion, nucleus	26.79	26.54

Protein Annotations

EnsemblPlants:TraesCS6D01G382600.1	EnsemblPlantsGene:TraesCS6D01G382600	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF20	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr6D:-:462272307..462273070

Molecular Weight (calculated)

21486.7 Da

IEP (calculated)

7.989

GRAVY (calculated)

0.191

Length

209 amino acids

Sequence
(BLAST)

001: MAAAAAAGAG GVAAGVAGSP CGACKFLRRR CVAECVFAPY FSSDQGAARF AAIHKVFGAS NAAKLLAHLP LADRCEAVVT ITYEAQSRLR DPVYGCVAQI
101: FALQQQVAIL QAQLMQARAQ IACGVQSTTS PVSHQWPDST SSSIASLLRQ QEVNSGSFAT GGALLPELMG GDVSMLQQHC GGKVEGGGGG AGDLQYLAQA
201: MMRSSNYSL

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.