Factsheet for GSMUA_Achr1P01350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35378	Canola	cytosol, nucleus, plastid	40.3	78.64
KRH19529	Soybean	plastid	36.32	60.33
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	57.21	59.59
GSMUA_Achr3P27340_001	Banana	mitochondrion, plastid	48.26	53.01
EER95498	Sorghum	cytosol, nucleus, plastid	43.78	52.38
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	43.28	52.1
Os03t0149000-01	Rice	plastid	46.27	50.27
KRH32155	Soybean	plastid	52.24	49.3
AT2G42430.1	Thale cress	plastid	58.71	48.16
Bra004693.1-P	Field mustard	plastid	58.21	47.95
TraesCS4A01G415300.1	Wheat	plastid	43.78	47.57
CDY64515	Canola	nucleus, plastid	57.71	47.54
CDY70198	Canola	nucleus	57.71	47.54
Bra000257.1-P	Field mustard	nucleus	56.22	47.48
HORVU4Hr1G080150.1	Barley	plastid	43.28	47.28
CDY47969	Canola	nucleus	57.71	47.15
CDY14831	Canola	nucleus	57.71	47.15
CDY22562	Canola	nucleus	55.72	47.06
TraesCS4D01G312700.1	Wheat	plastid	43.78	47.06
Bra016877.1-P	Field mustard	nucleus	57.21	46.75
TraesCS4B01G316100.1	Wheat	plastid	43.28	46.52
TraesCS6A01G398400.1	Wheat	plastid	47.26	46.12
TraesCS6D01G382600.1	Wheat	plastid	47.76	45.93
HORVU0Hr1G017670.2	Barley	plastid	47.76	45.71
EES07771	Sorghum	plastid	48.26	45.12
TraesCS6B01G438700.1	Wheat	plastid	47.26	45.02
GSMUA_Achr1P06580_001	Banana	mitochondrion	46.77	44.98
Os02t0820500-01	Rice	plastid	48.26	44.91
Zm00001d051891_P001	Maize	plastid	48.26	44.91
GSMUA_Achr10P...	Banana	mitochondrion	46.27	42.47
GSMUA_Achr11P...	Banana	mitochondrion	44.28	42.18
GSMUA_Achr4P25190_001	Banana	mitochondrion	44.78	42.06
GSMUA_Achr1P01360_001	Banana	mitochondrion, nucleus, plastid	44.78	42.06
GSMUA_AchrUn_...	Banana	mitochondrion	45.77	40.71
GSMUA_AchrUn_...	Banana	mitochondrion	46.27	40.09
GSMUA_Achr8P14330_001	Banana	mitochondrion	46.27	39.74
GSMUA_Achr2P11240_001	Banana	plastid	43.28	36.86
GSMUA_Achr1P02520_001	Banana	cytosol, nucleus, plastid	41.79	34.71
GSMUA_Achr5P11330_001	Banana	plastid	41.29	34.44
GSMUA_Achr11P...	Banana	mitochondrion	26.37	33.76
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	42.29	33.07
GSMUA_Achr4P28810_001	Banana	nucleus	37.81	25.76

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01350_001	EnsemblPlants:GSMUA_Achr1T01350_001	EnsemblPlantsGene:GSMUA_Achr1G01350_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529
PANTHER:PTHR31529:SF4	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002953791	UniProt:M0RW43
MapMan:15.5.24	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G01350_001]

Coordinates

chr1:+:1074038..1074878

Molecular Weight (calculated)

21790.9 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.165

Length

201 amino acids

Sequence
(BLAST)

001: MASGTGSPCG ACKFLRRKCA SDCVFAPYFS SEQGAVRFAA IHKVFGASNA AKLLLHVPQA DRCEAAVAIA YEAQARLKDP VYGCVGHIFA LQQQVTTLQL
101: QLMLVKAQIA QRLVTSQPSG SQWQGNDDGN PFLQPYSSWE SMSSSQSSRN FINQDSTRLL PKHDAVFKED LSVGGSSSKM WATHAEVGEL QDLAFRMAGN
201: L

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.