Factsheet for TraesCS4D01G312700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G316100.1	Wheat	plastid	98.93	98.93
TraesCS4A01G415300.1	Wheat	plastid	96.26	97.3
HORVU4Hr1G080150.1	Barley	plastid	94.12	95.65
Os03t0149000-01	Rice	plastid	75.94	76.76
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	64.71	72.46
EER95498	Sorghum	cytosol, nucleus, plastid	64.17	71.43
CDY35378	Canola	cytosol, nucleus, plastid	36.9	66.99
KRH19529	Soybean	plastid	36.36	56.2
VIT_07s0005g03030.t01	Wine grape	plastid	45.99	44.1
GSMUA_Achr1P01350_001	Banana	nucleus	47.06	43.78
TraesCS6D01G382600.1	Wheat	plastid	47.59	42.58
PGSC0003DMT400051680	Potato	nucleus	44.38	42.56
Solyc06g083930.1.1	Tomato	nucleus	44.38	42.35
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	42.78	41.45
KRH32155	Soybean	plastid	46.52	40.85
PGSC0003DMT400025135	Potato	nucleus	46.52	39.37
TraesCS4D01G001700.1	Wheat	mitochondrion	45.45	39.17
Solyc09g066260.2.1	Tomato	nucleus	46.52	37.83
Bra004693.1-P	Field mustard	plastid	48.13	36.89
AT2G42430.1	Thale cress	plastid	48.13	36.73
Bra000257.1-P	Field mustard	nucleus	46.52	36.55
CDY64515	Canola	nucleus, plastid	47.59	36.48
CDY47969	Canola	nucleus	47.59	36.18
CDY14831	Canola	nucleus	47.59	36.18
CDY22562	Canola	nucleus	45.99	36.13
CDY70198	Canola	nucleus	47.06	36.07
Bra016877.1-P	Field mustard	nucleus	47.06	35.77
TraesCS3D01G308000.1	Wheat	mitochondrion	39.57	30.08
TraesCS4D01G341500.1	Wheat	cytosol, mitochondrion, nucleus	27.81	30.06
TraesCS7D01G229900.1	Wheat	cytosol, nucleus, plastid	36.36	29.69
TraesCS4D01G312800.1	Wheat	plastid	44.92	29.37
TraesCS4D01G225200.1	Wheat	nucleus	40.11	28.85
TraesCS5D01G291300.1	Wheat	nucleus	28.34	28.04
TraesCS1D01G110300.1	Wheat	cytosol, mitochondrion, nucleus	26.2	23.22

Protein Annotations

EnsemblPlants:TraesCS4D01G312700.1	EnsemblPlantsGene:TraesCS4D01G312700	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31529	PANTHER:PTHR31529:SF13
PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:	:

Description

No Description!

Coordinates

chr4D:+:478992289..478992852

Molecular Weight (calculated)

19744.0 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.225

Length

187 amino acids

Sequence
(BLAST)

001: MAGAGVTTTG SPCGACKFLR RRCAAECVFA PYFCAEDGAS QFAAIHKVFG ASNAAKLLQQ VAPGDRSEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVV
101: ALQAQVAHAR TQAQLGAATA MHPLLQQQLQ QQAWQVAAAA DQHDHQSMTS TQSSSGCYSG AHQRSDGSSL HGAEMYCGYG EQEEGSY

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.