CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027678_P001	Maize	cytosol, nucleus, plastid	96.43	97.01
Os03t0149000-01	Rice	plastid	83.93	76.22
CDY35378	Canola	cytosol, nucleus, plastid	40.48	66.02
HORVU4Hr1G080150.1	Barley	plastid	71.43	65.22
TraesCS4A01G415300.1	Wheat	plastid	71.43	64.86
TraesCS4D01G312700.1	Wheat	plastid	71.43	64.17
TraesCS4B01G316100.1	Wheat	plastid	70.83	63.64
KRH19529	Soybean	plastid	41.07	57.02
VIT_07s0005g03030.t01	Wine grape	plastid	54.76	47.18
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	51.19	44.56
Solyc06g083930.1.1	Tomato	nucleus	51.79	44.39
PGSC0003DMT400051680	Potato	nucleus	51.19	44.1
GSMUA_Achr1P01350_001	Banana	nucleus	52.38	43.78
KRH32155	Soybean	plastid	55.36	43.66
EES07771	Sorghum	plastid	52.38	40.93
PGSC0003DMT400025135	Potato	nucleus	52.38	39.82
EES14059	Sorghum	mitochondrion	47.62	37.21
AT2G42430.1	Thale cress	plastid	54.17	37.14
Solyc09g066260.2.1	Tomato	nucleus	50.6	36.96
Bra004693.1-P	Field mustard	plastid	53.57	36.89
CDY64515	Canola	nucleus, plastid	53.57	36.89
CDY70198	Canola	nucleus	52.98	36.48
CDY14831	Canola	nucleus	52.38	35.77
CDY47969	Canola	nucleus	52.38	35.77
Bra000257.1-P	Field mustard	nucleus	50.6	35.71
EER92849	Sorghum	mitochondrion	51.79	35.51
Bra016877.1-P	Field mustard	nucleus	51.79	35.37
CDY22562	Canola	nucleus	50.0	35.29
EES01535	Sorghum	plastid	42.26	31.84
KXG38649	Sorghum	plastid	47.02	30.38
EER92557	Sorghum	nucleus	49.4	30.07
EER93325	Sorghum	plastid	27.98	26.11
OQU80868	Sorghum	peroxisome	30.36	25.37
OQU88465	Sorghum	nucleus	35.71	6.41

Protein Annotations

EnsemblPlants:EER95498	EnsemblPlantsGene:SORBI_3001G503100	EntrezGene:8080553	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31529	PANTHER:PTHR31529:SF13	PFAM:PF03195	PFscan:PS50891	ProteinID:EER95498	ProteinID:EER95498.1
RefSeq:XP_002468500.1	SEG:seg	UniParc:UPI0001A83064	UniProt:C5WXX1	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr1:-:77164942..77166556

Molecular Weight (calculated)

17611.8 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.170

Length

168 amino acids

Sequence
(BLAST)

001: MASSGTSGGG GSPGSPCGAC KFLRRKCAAE CVFAPHFCAE DGAAQFAAIH KVFGASNAAK LLQQVPPADR SEAAATVTYE AQARLRDPIY GCVAHIFALQ
101: QQVASLQMQV LQAKAQVAQT MAAAGPQGTN PLLQRWPLEP ESLSTQSSGC YSDMYCGFGD QEEGSYTR

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.