Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000257.1-P | Field mustard | nucleus | 99.16 | 99.16 |
| CDY35378 | Canola | cytosol, nucleus, plastid | 42.44 | 98.06 |
| AT2G42430.1 | Thale cress | plastid | 88.66 | 86.12 |
| CDY47969 | Canola | nucleus | 88.66 | 85.77 |
| CDY64515 | Canola | nucleus, plastid | 87.82 | 85.66 |
| CDY70198 | Canola | nucleus | 87.39 | 85.25 |
| CDY14831 | Canola | nucleus | 87.39 | 84.55 |
| KRH19529 | Soybean | plastid | 33.19 | 65.29 |
| VIT_07s0005g03030.t01 | Wine grape | plastid | 49.58 | 60.51 |
| KRH32155 | Soybean | plastid | 50.84 | 56.81 |
| GSMUA_Achr1P01350_001 | Banana | nucleus | 47.06 | 55.72 |
| PGSC0003DMT400025135 | Potato | nucleus | 50.42 | 54.3 |
| Solyc09g066260.2.1 | Tomato | nucleus | 50.84 | 52.61 |
| GSMUA_Achr5P13230_001 | Banana | mitochondrion, plastid | 41.18 | 50.78 |
| EER95498 | Sorghum | cytosol, nucleus, plastid | 35.29 | 50.0 |
| PGSC0003DMT400051680 | Potato | nucleus | 40.76 | 49.74 |
| Zm00001d027678_P001 | Maize | cytosol, nucleus, plastid | 34.87 | 49.7 |
| Solyc06g083930.1.1 | Tomato | nucleus | 40.76 | 49.49 |
| HORVU4Hr1G080150.1 | Barley | plastid | 36.97 | 47.83 |
| Zm00001d051891_P001 | Maize | plastid | 42.86 | 47.22 |
| TraesCS6A01G398400.1 | Wheat | plastid | 40.76 | 47.09 |
| Os03t0149000-01 | Rice | plastid | 36.55 | 47.03 |
| TraesCS4A01G415300.1 | Wheat | plastid | 36.55 | 47.03 |
| EES07771 | Sorghum | plastid | 42.02 | 46.51 |
| TraesCS6D01G382600.1 | Wheat | plastid | 40.76 | 46.41 |
| Os02t0820500-01 | Rice | plastid | 42.02 | 46.3 |
| TraesCS4D01G312700.1 | Wheat | plastid | 36.13 | 45.99 |
| TraesCS4B01G316100.1 | Wheat | plastid | 35.71 | 45.45 |
| HORVU0Hr1G017670.2 | Barley | plastid | 39.5 | 44.76 |
| TraesCS6B01G438700.1 | Wheat | plastid | 39.5 | 44.55 |
| CDX75748 | Canola | cytosol, mitochondrion, nucleus | 22.27 | 44.17 |
| CDY15375 | Canola | nucleus | 32.35 | 42.78 |
| CDY10793 | Canola | nucleus | 32.35 | 42.78 |
| CDY24760 | Canola | nucleus | 32.35 | 42.78 |
| CDX83633 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.01 | 42.73 |
| CDX82498 | Canola | cytosol, nucleus, plastid | 21.43 | 42.15 |
| CDY13647 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.01 | 41.32 |
| CDY07237 | Canola | nucleus | 33.19 | 40.93 |
| CDY60434 | Canola | nucleus | 30.67 | 39.89 |
| CDY14832 | Canola | mitochondrion, nucleus | 33.19 | 39.7 |
| CDY28537 | Canola | mitochondrion | 20.17 | 39.67 |
| CDY68561 | Canola | cytosol, nucleus, plastid | 31.09 | 39.36 |
| CDX74738 | Canola | cytosol, nucleus, plastid | 31.09 | 39.36 |
| CDX98901 | Canola | nucleus | 30.25 | 39.34 |
| CDX88974 | Canola | mitochondrion, nucleus | 36.13 | 39.27 |
| CDY48982 | Canola | mitochondrion | 19.75 | 38.84 |
| CDY57108 | Canola | mitochondrion | 28.99 | 38.76 |
| CDY37038 | Canola | mitochondrion | 28.99 | 38.76 |
| CDY00547 | Canola | mitochondrion, nucleus | 35.29 | 38.71 |
| CDX71962 | Canola | plastid | 35.71 | 38.46 |
| CDY67746 | Canola | nucleus | 35.71 | 38.29 |
| CDY06048 | Canola | plastid | 35.29 | 37.33 |
| CDY07236 | Canola | plastid | 34.45 | 36.61 |
| CDY69735 | Canola | cytosol, nucleus, plastid | 32.77 | 34.82 |
| CDY54923 | Canola | cytosol, nucleus, plastid | 32.35 | 34.38 |
| CDY18932 | Canola | plastid | 36.13 | 34.26 |
| CDY19098 | Canola | cytosol | 33.61 | 33.47 |
| CDY68635 | Canola | nucleus | 36.13 | 33.2 |
| CDY08551 | Canola | plastid | 23.95 | 33.14 |
| CDY00994 | Canola | plastid | 23.53 | 32.75 |
| CDY29956 | Canola | plastid | 37.82 | 32.73 |
| CDY57109 | Canola | plastid | 35.71 | 32.69 |
| CDX74209 | Canola | plastid | 36.97 | 32.23 |
| CDX92049 | Canola | plastid | 35.71 | 31.84 |
| CDY47970 | Canola | nucleus | 32.77 | 29.55 |
Protein Annotations
| EnsemblPlants:CDY22562 | EnsemblPlantsGene:GSBRNA2T00019165001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31529 | PANTHER:PTHR31529:SF4 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY22562 | ProteinID:CDY22562.1 | SEG:seg | UniParc:UPI0004EDDF3A |
| UniProt:A0A078GBZ9 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC03g23720DBnaC03g23720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBZ9]
Coordinates
chrLK032132:+:625561..628069
Molecular Weight (calculated)
26010.5 Da
IEP (calculated)
7.368
GRAVY (calculated)
-0.396
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGNITTA GTGSPCGACK FLRRKCLSDC IFEPYFSSEQ GAERFAAIHK VFGASNVSKL LLKVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFSLQQ
101: QVAYLQAQVM QMKAHIAGHK TSAAEGTHQF TTWQQTSGSP IDSAYSTPYN HHHHTYYGHI NPNNPVSPQS SLEESFSITS SDVTTTANVR ETHQTGGGVY
201: GQGELGFQEG YPNKKRSVSY CDSDLGELQA LALRMMKN
101: QVAYLQAQVM QMKAHIAGHK TSAAEGTHQF TTWQQTSGSP IDSAYSTPYN HHHHTYYGHI NPNNPVSPQS SLEESFSITS SDVTTTANVR ETHQTGGGVY
201: GQGELGFQEG YPNKKRSVSY CDSDLGELQA LALRMMKN
001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN
Arabidopsis Description
LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.