Factsheet for TraesCS6B01G438700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G017670.2	Barley	plastid	96.21	96.67
TraesCS6D01G382600.1	Wheat	plastid	90.05	90.91
TraesCS6A01G398400.1	Wheat	plastid	88.15	90.29
CDY35378	Canola	cytosol, nucleus, plastid	35.07	71.84
Os02t0820500-01	Rice	plastid	73.46	71.76
EES07771	Sorghum	plastid	70.62	69.3
Zm00001d051891_P001	Maize	plastid	69.67	68.06
KRH19529	Soybean	plastid	33.18	57.85
VIT_07s0005g03030.t01	Wine grape	plastid	47.39	51.28
TraesCS4B01G316100.1	Wheat	plastid	42.18	47.59
GSMUA_Achr1P01350_001	Banana	nucleus	45.02	47.26
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	43.13	47.15
KRH32155	Soybean	plastid	44.55	44.13
PGSC0003DMT400025135	Potato	nucleus	45.97	43.89
Solyc06g083930.1.1	Tomato	nucleus	38.39	41.33
PGSC0003DMT400051680	Potato	nucleus	37.91	41.03
Bra004693.1-P	Field mustard	plastid	46.45	40.16
Bra000257.1-P	Field mustard	nucleus	45.02	39.92
CDY14831	Canola	nucleus	46.45	39.84
CDY64515	Canola	nucleus, plastid	45.97	39.75
Solyc09g066260.2.1	Tomato	nucleus	43.13	39.57
CDY22562	Canola	nucleus	44.55	39.5
CDY47969	Canola	nucleus	45.97	39.43
CDY70198	Canola	nucleus	45.5	39.34
AT2G42430.1	Thale cress	plastid	45.5	39.18
Bra016877.1-P	Field mustard	nucleus	45.5	39.02
TraesCS4B01G001200.1	Wheat	nucleus	39.34	34.73
TraesCS4B01G224600.1	Wheat	plastid	42.18	33.97
TraesCS6B01G072200.1	Wheat	nucleus	36.97	32.91
TraesCS4B01G316200.1	Wheat	nucleus, plastid	44.08	32.29
TraesCS4B01G346500.1	Wheat	cytosol, mitochondrion, nucleus	25.59	32.14
TraesCS7B01G195100.1	Wheat	cytosol, nucleus, plastid	31.75	29.26
TraesCS5B01G282700.1	Wheat	nucleus	25.59	28.42

Protein Annotations

EnsemblPlants:TraesCS6B01G438700.1	EnsemblPlantsGene:TraesCS6B01G438700	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31529
PANTHER:PTHR31529:SF20	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr6B:+:704751310..704752065

Molecular Weight (calculated)

21715.0 Da

IEP (calculated)

7.997

GRAVY (calculated)

0.120

Length

211 amino acids

Sequence
(BLAST)

001: MAAAAGGGAG GGVAGVAGSP CGACKFLRRR CVAECVFAPY FSSEQGAARF AAIHKVFGAS NAAKLLAHLP LADRCEAVVT ITYEAQSRLR DPVYGCVAQI
101: FALQQQVAIL QAQLMQARAQ IACGAQSTTS PVSHHQPQPW LQDTSIAALL RQQENGSSFA AGGALLPELM SGDVSMLQQH CGGKVEGGGG GGAGDLQYLA
201: QAMMRSSNYS L

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.