Factsheet for Os02t0820500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07771	Sorghum	plastid	84.26	84.65
Zm00001d051891_P001	Maize	plastid	82.41	82.41
TraesCS6D01G382600.1	Wheat	plastid	73.61	76.08
TraesCS6A01G398400.1	Wheat	plastid	71.3	74.76
CDY35378	Canola	cytosol, nucleus, plastid	35.19	73.79
TraesCS6B01G438700.1	Wheat	plastid	71.76	73.46
HORVU0Hr1G017670.2	Barley	plastid	71.3	73.33
KRH19529	Soybean	plastid	33.33	59.5
VIT_07s0005g03030.t01	Wine grape	plastid	50.46	55.9
GSMUA_Achr5P13230_001	Banana	mitochondrion, plastid	46.3	51.81
GSMUA_Achr1P01350_001	Banana	nucleus	44.91	48.26
PGSC0003DMT400025135	Potato	nucleus	48.61	47.51
KRH32155	Soybean	plastid	46.76	47.42
Os03t0149000-01	Rice	plastid	39.81	46.49
Solyc06g083930.1.1	Tomato	nucleus	39.81	43.88
Solyc09g066260.2.1	Tomato	nucleus	46.3	43.48
PGSC0003DMT400051680	Potato	nucleus	38.89	43.08
Bra004693.1-P	Field mustard	plastid	48.61	43.03
CDY14831	Canola	nucleus	48.61	42.68
CDY64515	Canola	nucleus, plastid	48.15	42.62
Bra000257.1-P	Field mustard	nucleus	46.76	42.44
Os08t0563400-00	Rice	mitochondrion	42.13	42.33
CDY70198	Canola	nucleus	47.69	42.21
AT2G42430.1	Thale cress	plastid	47.69	42.04
CDY22562	Canola	nucleus	46.3	42.02
CDY47969	Canola	nucleus	47.69	41.87
Bra016877.1-P	Field mustard	nucleus	47.22	41.46
Os03t0149100-01	Rice	mitochondrion	46.76	39.0
Os03t0246900-00	Rice	nucleus	44.44	34.91
Os10t0162600-00	Rice	nucleus	42.59	34.2
Os01t0772100-01	Rice	mitochondrion	35.65	31.43
Os08t0517100-01	Rice	cytosol, nucleus, plastid	11.11	25.26

Protein Annotations

MapMan:15.5.24	EntrezGene:4331170	EMBL:AK064187	ProteinID:BAD22977.1	ProteinID:BAD23106.1	ProteinID:BAF10457.1
ProteinID:BAS81621.1	ncoils:Coil	InterPro:IPR004883	InterPro:LOB	EnsemblPlantsGene:Os02g0820500	EnsemblPlants:Os02t0820500-01
PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31529	PANTHER:PTHR31529:SF20	UniProt:Q6K713	UniParc:UPI00003B04D2
RefSeq:XP_015626197.1	SEG:seg	:	:	:	:

Description

DEGENERATED HULL 1Similar to LOB domain protein 17. (Os02t0820500-01)

Coordinates

chr2:-:35227503..35228609

Molecular Weight (calculated)

22458.9 Da

IEP (calculated)

7.935

GRAVY (calculated)

0.103

Length

216 amino acids

Sequence
(BLAST)

001: MAGATAAGAA AAAAGTGAGS PCGACKFLRR RCVPECVFAP YFSSEQGAAR FAAIHKVFGA SNASKLLSHL PVADRCEAVV TITYEAQARL RDPVYGCVAQ
101: IFALQQQVAI LQAQLMQARA QLACGIQSSS HSPVSWPDSG SISALLRQDM ARRPPGGALD DCFGGGGALL PELMAAGFKD DVAAVQMQQH CSKAVDAGEL
201: QYLAQAMMRS TSNYSQ

Best Arabidopsis Sequence Match ( AT2G42430.1 )
(BLAST)

001: MASSGNGTTA GTGSPCGACK FLRRKCASDC IFAPYFSSEQ GAARFAAIHK VFGASNVSKL LLNVPIHDRC EAVVTIAYEA QARLHDPVYG CVSHIFALQQ
101: QVAFLQSQVM QMKAQIAGHQ TSAAGDLRHS SESTNQFMTW QQTSVSPIGS AYSTPYNHHQ PYYGHVNPNN PVSPQSSLEE SFSNTSSDVT TTANVRETHH
201: QTGGGVYGHD GIGFHEGYPN KKRSVSYCSS DLGELQALAL RMMKN

Arabidopsis Description

LBD16LOB domain-containing protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.